| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is dppD [H]
Identifier: 78067858
GI number: 78067858
Start: 3556732
End: 3557730
Strand: Reverse
Name: dppD [H]
Synonym: Bcep18194_A6389
Alternate gene names: 78067858
Gene position: 3557730-3556732 (Counterclockwise)
Preceding gene: 78067859
Following gene: 78067857
Centisome position: 96.31
GC content: 65.77
Gene sequence:
>999_bases ATGAGCCAAGATCTTCTGACCATCCGCAATCTCGCGGTGAATTTCAACGGCCTGCCTGCCGTCGACCGGATCAACCTGTC GATCGCTCCGGGCGAGGTGGTGGGCGTCGTCGGCGAATCGGGCTCGGGCAAGAGCGTGACGATGATGGCGCTGATGGGCC TGATCGATGCGCCGGGCAAGGTGACGGCCGATGAGGTTACGTTCAACGGCGTCGACCTGCTGAAGGCGTCGCCGAAGGCG CGCCGCAAGATCGTCGGCAAGGACATCGCGATGGTGTTCCAGGACGCGCTGACGAGCCTGAACCCGAGCTACACGGTCGG CTATCAGATCAAGGAAGTGCTGAAGCTGCACGAGGGCTTGCGCGGCGACGCGCTGCACCGGCGCGCGCTCGAACTGCTCG ACCAGGTCGGCATTCCCGATGCGAAGAACCGCATTACGTCGTTCCCGCACCAGATGTCGGGCGGGATGAACCAGCGCGTG ATGATCGCGATGGCGGTGGCGTGCAACCCGAAGCTCCTGATCGCCGACGAGCCGACCACCGCGCTCGACGTGACGATCCA GGCGCAGATCATGGACCTGCTCGTGAAGCTGCAGAAGGAGCGCGGGATGGCGCTCGTGCTGATCTCGCACGACCTGGCCG TGGTGTCGGAGGTCGCGCAGCGCGTGGCGGTGATGTACGCGGGCGAGGTGATCGAGACGAACAGCGTGCCCGACATCTTC CGCGCGCCGCATCATCCGTACACCGAAGCGCTGCTCGCGGCGATTCCCGAGCACAATAAGGGGGCGCGTCGCCTTGCCGC ATTGCCCGGCATGGTGCCGGGCCGCGATGATCGCCCGTCCGGGTGCCTGTTCGCGCCGCGCTGCAAGTACGTCGTCGACG ACTGCTTCAAGGCGCGGCCGGCGCTCGACACGCTGGTGTCCGGCAATGAGGCGATGCGCGCACGCTGCATCAAGCCGCTC AACGTTTCCAACCTCGACCTGACGGGAGGTGCACGATGA
Upstream 100 bases:
>100_bases TGCCGGGCCTGTCGATCCTGATTTCGGTGCTCGCGATCAACCTGCTCGGCGACGGGCTGCGTGACGCGCTCGACCCCAAA CTGAAACGGATGGCCTAATC
Downstream 100 bases:
>100_bases ATGCAGTCAATCAAACGCCTCGCGTGTCGAACGACGAGGAAGCCGTGCTGGTGGCCGACGGCCTCGCGAAACACTACTCG GTGAAGCGCGGGATGTTCGG
Product: oligopeptide/dipeptide ABC transporter, ATPase subunit
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MSQDLLTIRNLAVNFNGLPAVDRINLSIAPGEVVGVVGESGSGKSVTMMALMGLIDAPGKVTADEVTFNGVDLLKASPKA RRKIVGKDIAMVFQDALTSLNPSYTVGYQIKEVLKLHEGLRGDALHRRALELLDQVGIPDAKNRITSFPHQMSGGMNQRV MIAMAVACNPKLLIADEPTTALDVTIQAQIMDLLVKLQKERGMALVLISHDLAVVSEVAQRVAVMYAGEVIETNSVPDIF RAPHHPYTEALLAAIPEHNKGARRLAALPGMVPGRDDRPSGCLFAPRCKYVVDDCFKARPALDTLVSGNEAMRARCIKPL NVSNLDLTGGAR
Sequences:
>Translated_332_residues MSQDLLTIRNLAVNFNGLPAVDRINLSIAPGEVVGVVGESGSGKSVTMMALMGLIDAPGKVTADEVTFNGVDLLKASPKA RRKIVGKDIAMVFQDALTSLNPSYTVGYQIKEVLKLHEGLRGDALHRRALELLDQVGIPDAKNRITSFPHQMSGGMNQRV MIAMAVACNPKLLIADEPTTALDVTIQAQIMDLLVKLQKERGMALVLISHDLAVVSEVAQRVAVMYAGEVIETNSVPDIF RAPHHPYTEALLAAIPEHNKGARRLAALPGMVPGRDDRPSGCLFAPRCKYVVDDCFKARPALDTLVSGNEAMRARCIKPL NVSNLDLTGGAR >Mature_331_residues SQDLLTIRNLAVNFNGLPAVDRINLSIAPGEVVGVVGESGSGKSVTMMALMGLIDAPGKVTADEVTFNGVDLLKASPKAR RKIVGKDIAMVFQDALTSLNPSYTVGYQIKEVLKLHEGLRGDALHRRALELLDQVGIPDAKNRITSFPHQMSGGMNQRVM IAMAVACNPKLLIADEPTTALDVTIQAQIMDLLVKLQKERGMALVLISHDLAVVSEVAQRVAVMYAGEVIETNSVPDIFR APHHPYTEALLAAIPEHNKGARRLAALPGMVPGRDDRPSGCLFAPRCKYVVDDCFKARPALDTLVSGNEAMRARCIKPLN VSNLDLTGGAR
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=231, Percent_Identity=25.1082251082251, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI150417984, Length=230, Percent_Identity=27.3913043478261, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI116734710, Length=217, Percent_Identity=24.8847926267281, Blast_Score=72, Evalue=9e-13, Organism=Homo sapiens, GI47078218, Length=238, Percent_Identity=26.890756302521, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI45446740, Length=238, Percent_Identity=26.890756302521, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI171184400, Length=260, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI21536376, Length=236, Percent_Identity=27.5423728813559, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI42741659, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI153792144, Length=209, Percent_Identity=24.8803827751196, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI21536378, Length=219, Percent_Identity=29.6803652968037, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI156105685, Length=250, Percent_Identity=26.4, Blast_Score=66, Evalue=5e-11, Organism=Escherichia coli, GI1789963, Length=321, Percent_Identity=57.3208722741433, Blast_Score=382, Evalue=1e-107, Organism=Escherichia coli, GI48994883, Length=320, Percent_Identity=44.6875, Blast_Score=271, Evalue=5e-74, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=48.8636363636364, Blast_Score=251, Evalue=4e-68, Organism=Escherichia coli, GI1787759, Length=324, Percent_Identity=41.9753086419753, Blast_Score=250, Evalue=8e-68, Organism=Escherichia coli, GI1787548, Length=304, Percent_Identity=41.7763157894737, Blast_Score=249, Evalue=1e-67, Organism=Escherichia coli, GI1788506, Length=261, Percent_Identity=47.1264367816092, Blast_Score=236, Evalue=1e-63, Organism=Escherichia coli, GI1787500, Length=334, Percent_Identity=39.8203592814371, Blast_Score=218, Evalue=4e-58, Organism=Escherichia coli, GI1789962, Length=284, Percent_Identity=39.0845070422535, Blast_Score=201, Evalue=5e-53, Organism=Escherichia coli, GI1787758, Length=335, Percent_Identity=37.910447761194, Blast_Score=191, Evalue=6e-50, Organism=Escherichia coli, GI1789890, Length=249, Percent_Identity=37.7510040160643, Blast_Score=150, Evalue=8e-38, Organism=Escherichia coli, GI48994997, Length=255, Percent_Identity=34.9019607843137, Blast_Score=148, Evalue=6e-37, Organism=Escherichia coli, GI1789891, Length=228, Percent_Identity=37.280701754386, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1787547, Length=265, Percent_Identity=29.0566037735849, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=36.7965367965368, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI1786398, Length=261, Percent_Identity=34.8659003831418, Blast_Score=127, Evalue=8e-31, Organism=Escherichia coli, GI1788225, Length=249, Percent_Identity=31.3253012048193, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI87081791, Length=251, Percent_Identity=31.8725099601594, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1787029, Length=239, Percent_Identity=29.2887029288703, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1789672, Length=252, Percent_Identity=28.968253968254, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI87081709, Length=252, Percent_Identity=28.968253968254, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI87081834, Length=202, Percent_Identity=33.6633663366337, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1788761, Length=241, Percent_Identity=29.4605809128631, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1790162, Length=248, Percent_Identity=27.0161290322581, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1786703, Length=196, Percent_Identity=35.7142857142857, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786563, Length=224, Percent_Identity=29.9107142857143, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1787712, Length=244, Percent_Identity=27.8688524590164, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787105, Length=210, Percent_Identity=34.2857142857143, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787089, Length=230, Percent_Identity=32.1739130434783, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1789873, Length=221, Percent_Identity=32.1266968325792, Blast_Score=95, Evalue=8e-21, Organism=Escherichia coli, GI1786872, Length=257, Percent_Identity=31.1284046692607, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788450, Length=239, Percent_Identity=26.7782426778243, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787370, Length=245, Percent_Identity=26.9387755102041, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1786345, Length=248, Percent_Identity=26.6129032258064, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI48995001, Length=241, Percent_Identity=29.8755186721992, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789593, Length=239, Percent_Identity=26.7782426778243, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788644, Length=258, Percent_Identity=27.906976744186, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=26.5217391304348, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786319, Length=220, Percent_Identity=28.6363636363636, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87082267, Length=250, Percent_Identity=25.6, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790467, Length=236, Percent_Identity=26.6949152542373, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789991, Length=238, Percent_Identity=29.8319327731092, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1789864, Length=258, Percent_Identity=25.5813953488372, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1790525, Length=243, Percent_Identity=26.7489711934156, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1786253, Length=228, Percent_Identity=28.0701754385965, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI87081782, Length=240, Percent_Identity=25.4166666666667, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1789586, Length=236, Percent_Identity=27.1186440677966, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788165, Length=235, Percent_Identity=25.531914893617, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1788472, Length=234, Percent_Identity=26.0683760683761, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790534, Length=234, Percent_Identity=30.3418803418803, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1788053, Length=210, Percent_Identity=27.1428571428571, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1790739, Length=231, Percent_Identity=26.4069264069264, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787792, Length=222, Percent_Identity=27.9279279279279, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787041, Length=242, Percent_Identity=26.8595041322314, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1790190, Length=241, Percent_Identity=26.9709543568465, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1786803, Length=254, Percent_Identity=24.4094488188976, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787143, Length=243, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787972, Length=239, Percent_Identity=25.5230125523013, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787112, Length=257, Percent_Identity=24.5136186770428, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115533608, Length=216, Percent_Identity=28.7037037037037, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17558664, Length=223, Percent_Identity=30.9417040358744, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI212646699, Length=244, Percent_Identity=24.5901639344262, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193202349, Length=223, Percent_Identity=26.457399103139, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17541710, Length=217, Percent_Identity=28.110599078341, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI193209708, Length=223, Percent_Identity=29.5964125560538, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115534520, Length=225, Percent_Identity=29.3333333333333, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17510237, Length=232, Percent_Identity=22.4137931034483, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193211015, Length=220, Percent_Identity=25.4545454545455, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71996809, Length=220, Percent_Identity=25.4545454545455, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193208177, Length=245, Percent_Identity=26.9387755102041, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193211017, Length=230, Percent_Identity=29.5652173913043, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17511077, Length=215, Percent_Identity=28.3720930232558, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25146777, Length=240, Percent_Identity=25.4166666666667, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115532730, Length=186, Percent_Identity=30.1075268817204, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=281, Percent_Identity=26.3345195729537, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6319856, Length=205, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6324498, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=5e-12, Organism=Drosophila melanogaster, GI24643674, Length=225, Percent_Identity=24.8888888888889, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI23397593, Length=225, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24666092, Length=232, Percent_Identity=24.1379310344828, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28573571, Length=224, Percent_Identity=23.6607142857143, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24659289, Length=249, Percent_Identity=26.5060240963855, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI17136662, Length=224, Percent_Identity=29.9107142857143, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24582014, Length=268, Percent_Identity=24.6268656716418, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24582012, Length=268, Percent_Identity=24.6268656716418, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI28573573, Length=224, Percent_Identity=24.1071428571429, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35717; Mature: 35586
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQDLLTIRNLAVNFNGLPAVDRINLSIAPGEVVGVVGESGSGKSVTMMALMGLIDAPGK CCCCCEEHHHHEECCCCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC VTADEVTFNGVDLLKASPKARRKIVGKDIAMVFQDALTSLNPSYTVGYQIKEVLKLHEGL CCCCCEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCC RGDALHRRALELLDQVGIPDAKNRITSFPHQMSGGMNQRVMIAMAVACNPKLLIADEPTT CCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHCCCCCCEEEEEEEEECCCEEEEECCCCC ALDVTIQAQIMDLLVKLQKERGMALVLISHDLAVVSEVAQRVAVMYAGEVIETNSVPDIF EEEEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEECCCCCHHH RAPHHPYTEALLAAIPEHNKGARRLAALPGMVPGRDDRPSGCLFAPRCKYVVDDCFKARP HCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHCCC ALDTLVSGNEAMRARCIKPLNVSNLDLTGGAR HHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure SQDLLTIRNLAVNFNGLPAVDRINLSIAPGEVVGVVGESGSGKSVTMMALMGLIDAPGK CCCCEEHHHHEECCCCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC VTADEVTFNGVDLLKASPKARRKIVGKDIAMVFQDALTSLNPSYTVGYQIKEVLKLHEGL CCCCCEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCC RGDALHRRALELLDQVGIPDAKNRITSFPHQMSGGMNQRVMIAMAVACNPKLLIADEPTT CCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHCCCCCCEEEEEEEEECCCEEEEECCCCC ALDVTIQAQIMDLLVKLQKERGMALVLISHDLAVVSEVAQRVAVMYAGEVIETNSVPDIF EEEEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEECCCCCHHH RAPHHPYTEALLAAIPEHNKGARRLAALPGMVPGRDDRPSGCLFAPRCKYVVDDCFKARP HCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHCCC ALDTLVSGNEAMRARCIKPLNVSNLDLTGGAR HHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]