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The map label for this gene is flgD

Identifier: 78067838

GI number: 78067838

Start: 3536044

End: 3536799

Strand: Reverse

Name: flgD

Synonym: Bcep18194_A6369

Alternate gene names: 78067838

Gene position: 3536799-3536044 (Counterclockwise)

Preceding gene: 78067839

Following gene: 78067837

Centisome position: 95.74

GC content: 67.2

Gene sequence:

>756_bases
ATGACTTCCTCCAACACGACGATCGGCAGCAACGGCACGAACGTGTCGAACCTGCCGACCGACACGATGAACACCAACAA
AGTGTCGACCAACGGCACGTCGGCGAGCGACCTGCAGGCGACGTTCCTGAAGCTGCTCGTCACGCAGTTGCAGAACCAGG
ACCCGACCAGCCCGGTCGACAGCTCGCAGATGACGTCGCAGCTCGCGCAGATCAACACGGTGAGCGGCATCGCGCAGCTG
AACACGTCGCTCACGTCGCTGTCGACGCAGCTCACGGCCGGCCAGCAGACGCAGGCCGCGCTGCTGATCGGCACGAACGT
GCTCGCACCGGGCAACGCGGTCGCGGTGAAGAGCGGCGCGGCGTCGCCGTTCGGCGTGTCGCTCGCGAGTTCAGTGTCGA
ACCTGACGATCACCGTGAAGAACGCGGCGGGCACCGTGGTGAACACGATCAACGCGGGCGCGCAGTCGGCCGGCACCGTG
CCGTTCAACTGGACGCCGACCGACGCGGCGGGCAACGCACTGCCGGACGGCAAGTACACCGTCAGCGCGTCGTACACCGA
CAGCAACGGCACGCCGCAGCCGGCCACGACGCTCGCGGCGTCGACCGTGCAGAGCGTGATCAAGCAGGCGGACGGCACGG
CGGGGCTCGTGCTGTCGAACGGCACGACCGTGGGGCTGACCCAGGTTGCGTCGATTTTCCCGAACACCACGTCGTCCGCG
TCGAATTCGTCCGGCAGCGGCACCACCTCCAACTGA

Upstream 100 bases:

>100_bases
ACGCTGATGCTCAAGACGCTGACGATCGGCTCGTAAGCCGCGCGTCGACCGACCTTACAGACTCGACAGTTCCGACAGTC
CCGACAGAAGGCCACCCAGG

Downstream 100 bases:

>100_bases
TACTGATCGAGCAATCTCGAAACGGAGACCGAAATGGGTTATCAACAGGGTCTGAGCGGCCTCGCGGGTGCATCGAACGC
GCTCGACGTGATCGGCAACA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTSSNTTIGSNGTNVSNLPTDTMNTNKVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQL
NTSLTSLSTQLTAGQQTQAALLIGTNVLAPGNAVAVKSGAASPFGVSLASSVSNLTITVKNAAGTVVNTINAGAQSAGTV
PFNWTPTDAAGNALPDGKYTVSASYTDSNGTPQPATTLAASTVQSVIKQADGTAGLVLSNGTTVGLTQVASIFPNTTSSA
SNSSGSGTTSN

Sequences:

>Translated_251_residues
MTSSNTTIGSNGTNVSNLPTDTMNTNKVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQL
NTSLTSLSTQLTAGQQTQAALLIGTNVLAPGNAVAVKSGAASPFGVSLASSVSNLTITVKNAAGTVVNTINAGAQSAGTV
PFNWTPTDAAGNALPDGKYTVSASYTDSNGTPQPATTLAASTVQSVIKQADGTAGLVLSNGTTVGLTQVASIFPNTTSSA
SNSSGSGTTSN
>Mature_250_residues
TSSNTTIGSNGTNVSNLPTDTMNTNKVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLN
TSLTSLSTQLTAGQQTQAALLIGTNVLAPGNAVAVKSGAASPFGVSLASSVSNLTITVKNAAGTVVNTINAGAQSAGTVP
FNWTPTDAAGNALPDGKYTVSASYTDSNGTPQPATTLAASTVQSVIKQADGTAGLVLSNGTTVGLTQVASIFPNTTSSAS
NSSGSGTTSN

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=208, Percent_Identity=42.3076923076923, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 24877; Mature: 24746

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSNTTIGSNGTNVSNLPTDTMNTNKVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVD
CCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
SSQMTSQLAQINTVSGIAQLNTSLTSLSTQLTAGQQTQAALLIGTNVLAPGNAVAVKSGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCEEEEECCC
ASPFGVSLASSVSNLTITVKNAAGTVVNTINAGAQSAGTVPFNWTPTDAAGNALPDGKYT
CCCCCHHHHCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
VSASYTDSNGTPQPATTLAASTVQSVIKQADGTAGLVLSNGTTVGLTQVASIFPNTTSSA
EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEHHHHHHHHCCCCCCCC
SNSSGSGTTSN
CCCCCCCCCCC
>Mature Secondary Structure 
TSSNTTIGSNGTNVSNLPTDTMNTNKVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVD
CCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
SSQMTSQLAQINTVSGIAQLNTSLTSLSTQLTAGQQTQAALLIGTNVLAPGNAVAVKSGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCEEEEECCC
ASPFGVSLASSVSNLTITVKNAAGTVVNTINAGAQSAGTVPFNWTPTDAAGNALPDGKYT
CCCCCHHHHCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
VSASYTDSNGTPQPATTLAASTVQSVIKQADGTAGLVLSNGTTVGLTQVASIFPNTTSSA
EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEHHHHHHHHCCCCCCCC
SNSSGSGTTSN
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]