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The map label for this gene is yfgF [C]

Identifier: 78067789

GI number: 78067789

Start: 3485520

End: 3487358

Strand: Direct

Name: yfgF [C]

Synonym: Bcep18194_A6320

Alternate gene names: 78067789

Gene position: 3485520-3487358 (Clockwise)

Preceding gene: 78067788

Following gene: 78067790

Centisome position: 94.35

GC content: 70.53

Gene sequence:

>1839_bases
ATGCCCGCGCCCCACCCCGACTCCGCTGCCGCCAGCATCACGCGCCTGATCGCGGATCGCGCGCTCGCCGCCGTCTTCCA
GCCGATCGTCGATCTCGGGTCGGGAACGGTCGTCGGATACGAGGGCCTGATACGCGGCCCGCGCGGCACCGACCTCGAGC
CGCCCGTCGCGCTGTTCGCGCAGGCCGCGCGCGAAGGCGAAACCCTCGCGCTCGAACAGGCAGCCGCGCTCACCTGCCTC
GACGCGTTCGCGGCACTCGGCTGCGACGGCAAGCTGTTCCTCAATTTCAGCGCCGGGACGATCCTGAAGCTCGCCAGCGA
ACGCGAGCGCGTACGCCAGCTCCTCGTCCGCGCGCGGATCGCCGCCGAGCGCATCGTGATCGAGCTGACCGAGCAGAACG
CGATTCCCGACGTCGCCCACATCGGGCCGGCCGTCGCGTCGCTGCGCGACGCCGGCGTCCAGTTCGCGCTCGACGACTAC
GGCACCGCGAACGCGAGCATGAACCTGTGGCTGCGCCTGCATCCGGACGTCGTGAAGATCGACCGCTTCTTCATCCACGA
CATCGCCCGCGACCCGCTCAAGTTCGAAGCCGTGAAGGCGATGCAGCACTTCGCTCAGGCGAGCGGCGCGCAACTGATCG
CGGAAGGCATCGAGAACGAATGCGACCTGATCGTCGTGCGCGACATGGGCATCTGCTGCGTTCAGGGCTTCCTGCTCGGC
CGGCCGAACGCGCAGCCGTCGCGGGTCGTCGCACCGGCCGCGCGTGACGCGATCCGCGCGCCGCACATCGCGGTGTTTCC
CGGCGCGACGCGCTCGGTGCGGCCGGCCGGCACGATCGCCGGGAAGATGCTGGTGCCGGCGCCGGCACTGCCGCGCGACG
CGACCAGCAACGACGTGCTCGACCTGTTCAACCGGATGCCCGACCTGCACGCGGTCGCGCTCGTCGAACGCGGGCGGCCC
GTCGCGCTCGTGAATCGCCGCGGCTTCATCGACCGCTTCGCGCTGCCGTACCACCGCGAGGTGTTCGGGAAGAAGCCGTG
CCTGCAGTTCGCGAACGACGCGCCGCTGATGATCGACAACGCGACGACGTTCGAGCAGCTCGCGATGCTGCTCGCGAGCC
ACGACCAGCGCTATCTCGCGGACGGCTTCGTGATCACCGAACACGGCCGCTACGTCGGGCTTGGCACCGGCGAGAGCCTC
GTGCGGGCGGTGACCGAGATGCGCATCGAGGCCGCGCGCTACGCGAATCCGCTGACGTTCCTGCCCGGCAACATCCCGAT
CAGCGCGCACATCGACCGCCTGCTCCAGCGCGACGCCGGCTTTCATGCGTGCTATGTCGACCTGAACCAGTTCAAGCCGT
TCAACGACCAGTACGGCTACTGGCAGGGCGACGAGGTGCTGAAATTCGCGGCGACGGTGCTGGCCGGCGTGTGCGACCCG
CAGCGCGACTTTCTCGGGCACGTCGGCGGCGACGATTTCCTCGTGCTGTTCCAGCGCGCCGACTGGCGCGAACGCGCCAC
CGACGCGATCGCGCGCTTCAACGACGGCGCGCAACTCTTCTACACGCAGGCCGACCGGCAGGCGGGCGGGCTGCACGGCG
AAGACCGCCACGGCAACCCGGCGTTCTTCGGCTTCGTGACGATGGCGATCGGCGCGGTCGGCGTGCCGGCCGGCGCGCAC
GGCGCGAAGCGCTACGGCAGCGACGAGATCGCGTCGGTCGCGGCGCTCGCGAAGCGGCGCGCGAAACAGCAGCCGGATGG
GCTCGCGGTCGTCGACCTCGATGCGGGGCGCGCCGCGCTGCGCCATCGCGGCGAGCCGTCGGCCGTGGCAATCCGCTGA

Upstream 100 bases:

>100_bases
GATGCACCAGCAGCGCCCATCGCGTCACGAAATCTTCATTCAATTCTCCGCGAGCGATGCCGTTAAGTCGGGCGTCCTGT
CGATTCGGCTGCCCTCGCCC

Downstream 100 bases:

>100_bases
ACGGCGGGCGGCCGCCGTTTGCAGACACGGCGGCGCCCGGTGCGGCGGTGGCGCGCATTCGCCCGCCAGGCAGCGAGACC
GTTAGTTGCCCATCAGCCTC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 612; Mature: 611

Protein sequence:

>612_residues
MPAPHPDSAAASITRLIADRALAAVFQPIVDLGSGTVVGYEGLIRGPRGTDLEPPVALFAQAAREGETLALEQAAALTCL
DAFAALGCDGKLFLNFSAGTILKLASERERVRQLLVRARIAAERIVIELTEQNAIPDVAHIGPAVASLRDAGVQFALDDY
GTANASMNLWLRLHPDVVKIDRFFIHDIARDPLKFEAVKAMQHFAQASGAQLIAEGIENECDLIVVRDMGICCVQGFLLG
RPNAQPSRVVAPAARDAIRAPHIAVFPGATRSVRPAGTIAGKMLVPAPALPRDATSNDVLDLFNRMPDLHAVALVERGRP
VALVNRRGFIDRFALPYHREVFGKKPCLQFANDAPLMIDNATTFEQLAMLLASHDQRYLADGFVITEHGRYVGLGTGESL
VRAVTEMRIEAARYANPLTFLPGNIPISAHIDRLLQRDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
QRDFLGHVGGDDFLVLFQRADWRERATDAIARFNDGAQLFYTQADRQAGGLHGEDRHGNPAFFGFVTMAIGAVGVPAGAH
GAKRYGSDEIASVAALAKRRAKQQPDGLAVVDLDAGRAALRHRGEPSAVAIR

Sequences:

>Translated_612_residues
MPAPHPDSAAASITRLIADRALAAVFQPIVDLGSGTVVGYEGLIRGPRGTDLEPPVALFAQAAREGETLALEQAAALTCL
DAFAALGCDGKLFLNFSAGTILKLASERERVRQLLVRARIAAERIVIELTEQNAIPDVAHIGPAVASLRDAGVQFALDDY
GTANASMNLWLRLHPDVVKIDRFFIHDIARDPLKFEAVKAMQHFAQASGAQLIAEGIENECDLIVVRDMGICCVQGFLLG
RPNAQPSRVVAPAARDAIRAPHIAVFPGATRSVRPAGTIAGKMLVPAPALPRDATSNDVLDLFNRMPDLHAVALVERGRP
VALVNRRGFIDRFALPYHREVFGKKPCLQFANDAPLMIDNATTFEQLAMLLASHDQRYLADGFVITEHGRYVGLGTGESL
VRAVTEMRIEAARYANPLTFLPGNIPISAHIDRLLQRDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
QRDFLGHVGGDDFLVLFQRADWRERATDAIARFNDGAQLFYTQADRQAGGLHGEDRHGNPAFFGFVTMAIGAVGVPAGAH
GAKRYGSDEIASVAALAKRRAKQQPDGLAVVDLDAGRAALRHRGEPSAVAIR
>Mature_611_residues
PAPHPDSAAASITRLIADRALAAVFQPIVDLGSGTVVGYEGLIRGPRGTDLEPPVALFAQAAREGETLALEQAAALTCLD
AFAALGCDGKLFLNFSAGTILKLASERERVRQLLVRARIAAERIVIELTEQNAIPDVAHIGPAVASLRDAGVQFALDDYG
TANASMNLWLRLHPDVVKIDRFFIHDIARDPLKFEAVKAMQHFAQASGAQLIAEGIENECDLIVVRDMGICCVQGFLLGR
PNAQPSRVVAPAARDAIRAPHIAVFPGATRSVRPAGTIAGKMLVPAPALPRDATSNDVLDLFNRMPDLHAVALVERGRPV
ALVNRRGFIDRFALPYHREVFGKKPCLQFANDAPLMIDNATTFEQLAMLLASHDQRYLADGFVITEHGRYVGLGTGESLV
RAVTEMRIEAARYANPLTFLPGNIPISAHIDRLLQRDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDPQ
RDFLGHVGGDDFLVLFQRADWRERATDAIARFNDGAQLFYTQADRQAGGLHGEDRHGNPAFFGFVTMAIGAVGVPAGAHG
AKRYGSDEIASVAALAKRRAKQQPDGLAVVDLDAGRAALRHRGEPSAVAIR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788849, Length=136, Percent_Identity=35.2941176470588, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=26.1904761904762, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082096, Length=212, Percent_Identity=27.3584905660377, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=27.8481012658228, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1787541, Length=240, Percent_Identity=27.5, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI226510982, Length=246, Percent_Identity=29.6747967479675, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081980, Length=120, Percent_Identity=30.8333333333333, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=25.8474576271186, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787055, Length=230, Percent_Identity=26.9565217391304, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788502, Length=223, Percent_Identity=26.9058295964126, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 66143; Mature: 66012

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPHPDSAAASITRLIADRALAAVFQPIVDLGSGTVVGYEGLIRGPRGTDLEPPVALFA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHEECCCCCCCCCHHHHHH
QAAREGETLALEQAAALTCLDAFAALGCDGKLFLNFSAGTILKLASERERVRQLLVRARI
HHHCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
AAERIVIELTEQNAIPDVAHIGPAVASLRDAGVQFALDDYGTANASMNLWLRLHPDVVKI
HHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCHHHH
DRFFIHDIARDPLKFEAVKAMQHFAQASGAQLIAEGIENECDLIVVRDMGICCVQGFLLG
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHCC
RPNAQPSRVVAPAARDAIRAPHIAVFPGATRSVRPAGTIAGKMLVPAPALPRDATSNDVL
CCCCCCCCEECHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCEEECCCCCCCCCCCHHHH
DLFNRMPDLHAVALVERGRPVALVNRRGFIDRFALPYHREVFGKKPCLQFANDAPLMIDN
HHHHCCCCHHHHHHHHCCCCEEEEECCCCHHHHCCCHHHHHHCCCCHHHHCCCCCEEEEC
ATTFEQLAMLLASHDQRYLADGFVITEHGRYVGLGTGESLVRAVTEMRIEAARYANPLTF
CCHHHHHHHHHHHCCCCEECCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEE
LPGNIPISAHIDRLLQRDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
CCCCCCHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
QRDFLGHVGGDDFLVLFQRADWRERATDAIARFNDGAQLFYTQADRQAGGLHGEDRHGNP
CHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCC
AFFGFVTMAIGAVGVPAGAHGAKRYGSDEIASVAALAKRRAKQQPDGLAVVDLDAGRAAL
HHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
RHRGEPSAVAIR
HCCCCCCEEEEC
>Mature Secondary Structure 
PAPHPDSAAASITRLIADRALAAVFQPIVDLGSGTVVGYEGLIRGPRGTDLEPPVALFA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHEECCCCCCCCCHHHHHH
QAAREGETLALEQAAALTCLDAFAALGCDGKLFLNFSAGTILKLASERERVRQLLVRARI
HHHCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
AAERIVIELTEQNAIPDVAHIGPAVASLRDAGVQFALDDYGTANASMNLWLRLHPDVVKI
HHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCHHHH
DRFFIHDIARDPLKFEAVKAMQHFAQASGAQLIAEGIENECDLIVVRDMGICCVQGFLLG
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHCC
RPNAQPSRVVAPAARDAIRAPHIAVFPGATRSVRPAGTIAGKMLVPAPALPRDATSNDVL
CCCCCCCCEECHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCEEECCCCCCCCCCCHHHH
DLFNRMPDLHAVALVERGRPVALVNRRGFIDRFALPYHREVFGKKPCLQFANDAPLMIDN
HHHHCCCCHHHHHHHHCCCCEEEEECCCCHHHHCCCHHHHHHCCCCHHHHCCCCCEEEEC
ATTFEQLAMLLASHDQRYLADGFVITEHGRYVGLGTGESLVRAVTEMRIEAARYANPLTF
CCHHHHHHHHHHHCCCCEECCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEE
LPGNIPISAHIDRLLQRDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
CCCCCCHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
QRDFLGHVGGDDFLVLFQRADWRERATDAIARFNDGAQLFYTQADRQAGGLHGEDRHGNP
CHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCC
AFFGFVTMAIGAVGVPAGAHGAKRYGSDEIASVAALAKRRAKQQPDGLAVVDLDAGRAAL
HHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
RHRGEPSAVAIR
HCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]