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The map label for this gene is cpdB [H]

Identifier: 78067713

GI number: 78067713

Start: 3401497

End: 3403566

Strand: Direct

Name: cpdB [H]

Synonym: Bcep18194_A6244

Alternate gene names: 78067713

Gene position: 3401497-3403566 (Clockwise)

Preceding gene: 78067702

Following gene: 78067714

Centisome position: 92.08

GC content: 66.38

Gene sequence:

>2070_bases
ATGCGTCTCCCCCTGCTTTCCCGCCGTCGCGTGCCGGCCATCGCCGCGCTCGCCAGCCTCGCCTTCATCCTCGCCGCCTG
TGGCGGCGACGACGTCACCTCGCCGCCGGTGACGCCGCCGGCAGCCCAGGCGCCTGTCGGCACGACGGCCACGCTCGCCC
TGCTCGAGACGACCGACCTGCACACCAACGTGCTGTCGTATGACTATTTCAAGCTCGCCGCCGACAATTCGCTCGGCTTC
GAGCGCGTGTCGACGCTGATTGCACAAGCGCGCAAGCAGTATCCGAACACGCTGCTGCTCGACAACGGCGACACGATCCA
GGGCACGGCGCTGTCGGACTACCAGGCGCTCGTGAAGCCGGTCAGCTGCGACCAGACGCTCGCGATCTACAAGGTGATGA
ACGCCGCGAAATTCGACGGCGGCGGCATCGGCAACCACGAATTCAACTACGGGCTGCCGTACCTGTCGCAGGTGACCGGC
AACACGTTCGAGGTCGACGGCCTGCCGGCGCCGGCCCAGCAGAAGAAGTGCGCGGGCCCGAACTTCCCGCAGGTGCTGGC
GAACGTGATCAGCGCGAAGACCAACGCGCCGCTGTTCACGCCGTACACGATCCTGACCCGCACCGTGACCGCGACGACGC
CGGACGGCAAGACGGTCAGCGCGCCCGTGAAGATCGGCATCATCGGCTTCACGCCGCCCGCGATCATGAACTGGGACAAG
CGCTGGCTCGACGGCAAGGTCTACACGACCGGCCTGAAGGAAGCGGCCGAGAAGTACGTTCCGGAGATGCGCGCGAAGGG
CGCCGATCTCGTCGTCGCGATCTCGCACGGCGGCCTCGACAATTCCGCGTATTCGCCGACGATGGAGAACGGCAGCTGGT
GGCTGTCGAAGGTAACCGGCATCGACGCGATGCTGATCGGCCATTCGCACCAGGTGTTCCCGGACGCGAACAGCACCGTG
TCGCAGTTCAACCTGCCGGGCGTCGACAAGGTCAAGGGCACCGTCAACGGCGTGCCGACCGTGATGGCCAACTACTGGGG
CAAGCATCTCGGCGTGATCAAGCTCGGCCTGAAGTTCGACGGCAAGACGTGGAGCGTCGACAAGTCGCAGACGACCGTCG
AGGCGCGCCCGATCCAGAACGCCGACAAGAGCTACGTCGCGGCCGATCCGTCGGTTTCCGCCGCCATCGCCGCCGAGCAC
CAGGCGACGATCGACTACGTGAAGACGCCGATCGGCTCGACCGACTACCGGATGAACTCGTACTTCGCCGATGTCGGCGA
TCCGGGTGCGATCCAGATCGTCAACGAAGCGCAGGCCGACTACGTGAAGACCTACGTGCAGGCGAACCTGCCGCAATACG
CGTCGCTGCCGGTGCTGTCGGTCAGCGCTCCGTTCAAGAGCGGCTTCGGCGGCGGCACCGACTACACCGACGTCGCGCCG
GGCGCACTCGCGATCAACAACGCGGCCGACCTGTACCTGTACCCGAACACCGTGTACGCGGTGAAGGTGAGCGGCGCCGA
CGTGAAGAACTGGCTCGAAACCGCGGCCAAGCGCTTCAACCGCATCGACCCGACCAAGGCGACCGTGCAGCCGCTCGTCA
GCACGTTCCCCGGCTACAACTTCGACATGTTCACGTCGGCCGATCTCGCGTATGAAATCGACGTCACGCAGCCGGTCGGC
AGCCGGATCAAGAACCTGACGTACAAGGGCGCGGCGATCGACCCGAACGCGCAGTTCATCGTCGCGACCAACAACTACCG
CGCAAGCGGCGGCGGCAACTTCCCGGGCCTCGACGGCAGCAAGACGATCTTCGCGTCGCCGGATGCAAACCGCGACGTGC
TGATCGCGTTCGTGAAGCAGCGCGGCAAGATCACGCGCACGGCCGACGGCGCGCAGCGCAGCTGGCGCTTCACGAAGCTC
GCGAGCTCGGTCGCGCACGTGCAGTTCGCGTCCGCGCCGAACCGCCTCGGCGACGCGGCGGCGGCCGGCCTGACCGGCAT
CACGCAGGTCGTGGCCGACGACGGTTCGGGCAAGAACCTCGCCACCTACGAAATCGACCTCACGCAATGA

Upstream 100 bases:

>100_bases
TCGATACTCTCACGCGCCGCACATCAGGCCGTCGGCGCCCCGCGCCGCCATTCGTTGCGTACTCGCATTTCATAAAACAG
AACACCGAACAGGACAACCG

Downstream 100 bases:

>100_bases
GGCCCGCGATGCAACCGATCCGGACGATGCGGCCGGCCGAAACCGGCCTCGCCGCCGCCGCGCGGCGCCTGCTGCGCGCG
AAACTCCCGCCGGCCGCGCT

Product: 5'-nucleotidase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 689; Mature: 689

Protein sequence:

>689_residues
MRLPLLSRRRVPAIAALASLAFILAACGGDDVTSPPVTPPAAQAPVGTTATLALLETTDLHTNVLSYDYFKLAADNSLGF
ERVSTLIAQARKQYPNTLLLDNGDTIQGTALSDYQALVKPVSCDQTLAIYKVMNAAKFDGGGIGNHEFNYGLPYLSQVTG
NTFEVDGLPAPAQQKKCAGPNFPQVLANVISAKTNAPLFTPYTILTRTVTATTPDGKTVSAPVKIGIIGFTPPAIMNWDK
RWLDGKVYTTGLKEAAEKYVPEMRAKGADLVVAISHGGLDNSAYSPTMENGSWWLSKVTGIDAMLIGHSHQVFPDANSTV
SQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVIKLGLKFDGKTWSVDKSQTTVEARPIQNADKSYVAADPSVSAAIAAEH
QATIDYVKTPIGSTDYRMNSYFADVGDPGAIQIVNEAQADYVKTYVQANLPQYASLPVLSVSAPFKSGFGGGTDYTDVAP
GALAINNAADLYLYPNTVYAVKVSGADVKNWLETAAKRFNRIDPTKATVQPLVSTFPGYNFDMFTSADLAYEIDVTQPVG
SRIKNLTYKGAAIDPNAQFIVATNNYRASGGGNFPGLDGSKTIFASPDANRDVLIAFVKQRGKITRTADGAQRSWRFTKL
ASSVAHVQFASAPNRLGDAAAAGLTGITQVVADDGSGKNLATYEIDLTQ

Sequences:

>Translated_689_residues
MRLPLLSRRRVPAIAALASLAFILAACGGDDVTSPPVTPPAAQAPVGTTATLALLETTDLHTNVLSYDYFKLAADNSLGF
ERVSTLIAQARKQYPNTLLLDNGDTIQGTALSDYQALVKPVSCDQTLAIYKVMNAAKFDGGGIGNHEFNYGLPYLSQVTG
NTFEVDGLPAPAQQKKCAGPNFPQVLANVISAKTNAPLFTPYTILTRTVTATTPDGKTVSAPVKIGIIGFTPPAIMNWDK
RWLDGKVYTTGLKEAAEKYVPEMRAKGADLVVAISHGGLDNSAYSPTMENGSWWLSKVTGIDAMLIGHSHQVFPDANSTV
SQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVIKLGLKFDGKTWSVDKSQTTVEARPIQNADKSYVAADPSVSAAIAAEH
QATIDYVKTPIGSTDYRMNSYFADVGDPGAIQIVNEAQADYVKTYVQANLPQYASLPVLSVSAPFKSGFGGGTDYTDVAP
GALAINNAADLYLYPNTVYAVKVSGADVKNWLETAAKRFNRIDPTKATVQPLVSTFPGYNFDMFTSADLAYEIDVTQPVG
SRIKNLTYKGAAIDPNAQFIVATNNYRASGGGNFPGLDGSKTIFASPDANRDVLIAFVKQRGKITRTADGAQRSWRFTKL
ASSVAHVQFASAPNRLGDAAAAGLTGITQVVADDGSGKNLATYEIDLTQ
>Mature_689_residues
MRLPLLSRRRVPAIAALASLAFILAACGGDDVTSPPVTPPAAQAPVGTTATLALLETTDLHTNVLSYDYFKLAADNSLGF
ERVSTLIAQARKQYPNTLLLDNGDTIQGTALSDYQALVKPVSCDQTLAIYKVMNAAKFDGGGIGNHEFNYGLPYLSQVTG
NTFEVDGLPAPAQQKKCAGPNFPQVLANVISAKTNAPLFTPYTILTRTVTATTPDGKTVSAPVKIGIIGFTPPAIMNWDK
RWLDGKVYTTGLKEAAEKYVPEMRAKGADLVVAISHGGLDNSAYSPTMENGSWWLSKVTGIDAMLIGHSHQVFPDANSTV
SQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVIKLGLKFDGKTWSVDKSQTTVEARPIQNADKSYVAADPSVSAAIAAEH
QATIDYVKTPIGSTDYRMNSYFADVGDPGAIQIVNEAQADYVKTYVQANLPQYASLPVLSVSAPFKSGFGGGTDYTDVAP
GALAINNAADLYLYPNTVYAVKVSGADVKNWLETAAKRFNRIDPTKATVQPLVSTFPGYNFDMFTSADLAYEIDVTQPVG
SRIKNLTYKGAAIDPNAQFIVATNNYRASGGGNFPGLDGSKTIFASPDANRDVLIAFVKQRGKITRTADGAQRSWRFTKL
ASSVAHVQFASAPNRLGDAAAAGLTGITQVVADDGSGKNLATYEIDLTQ

Specific function: This bifunctional enzyme catalyzes two consecutive reactions during ribonucleic acid degradation. Converts a 2',3'- cyclic nucleotide to a 3'-nucleotide and then the 3'-nucleotide to the corresponding nucleoside and phosphate [H]

COG id: COG0737

COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 5'-nucleotidase family [H]

Homologues:

Organism=Escherichia coli, GI1790658, Length=670, Percent_Identity=42.3880597014925, Blast_Score=469, Evalue=1e-133,

Paralogues:

None

Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008334
- InterPro:   IPR006146
- InterPro:   IPR006179
- InterPro:   IPR006294
- InterPro:   IPR004843 [H]

Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]

EC number: =3.1.3.6; =3.1.4.16 [H]

Molecular weight: Translated: 73310; Mature: 73310

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00786 5_NUCLEOTIDASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPLLSRRRVPAIAALASLAFILAACGGDDVTSPPVTPPAAQAPVGTTATLALLETTDL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
HTNVLSYDYFKLAADNSLGFERVSTLIAQARKQYPNTLLLDNGDTIQGTALSDYQALVKP
HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEECCCHHHHHHHHCC
VSCDQTLAIYKVMNAAKFDGGGIGNHEFNYGLPYLSQVTGNTFEVDGLPAPAQQKKCAGP
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHCCCCC
NFPQVLANVISAKTNAPLFTPYTILTRTVTATTPDGKTVSAPVKIGIIGFTPPAIMNWDK
CHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCEEECCEEEEEEECCCHHHCCCCH
RWLDGKVYTTGLKEAAEKYVPEMRAKGADLVVAISHGGLDNSAYSPTMENGSWWLSKVTG
HHCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCC
IDAMLIGHSHQVFPDANSTVSQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVIKLGLKFD
CEEEEECCCCEECCCCCCCHHHCCCCCHHHHCCCCCCCHHHHHHHCCCCCCEEEEEEEEC
GKTWSVDKSQTTVEARPIQNADKSYVAADPSVSAAIAAEHQATIDYVKTPIGSTDYRMNS
CCEEECCCCCCEEEECCCCCCCCCEEECCCCCCEEEECCCHHHHHHHHCCCCCCCCEECC
YFADVGDPGAIQIVNEAQADYVKTYVQANLPQYASLPVLSVSAPFKSGFGGGTDYTDVAP
EEECCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
GALAINNAADLYLYPNTVYAVKVSGADVKNWLETAAKRFNRIDPTKATVQPLVSTFPGYN
CEEEECCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
FDMFTSADLAYEIDVTQPVGSRIKNLTYKGAAIDPNAQFIVATNNYRASGGGNFPGLDGS
EEEEECCCEEEEEECCCHHHHHHHCCEECCCEECCCCEEEEEECCEECCCCCCCCCCCCC
KTIFASPDANRDVLIAFVKQRGKITRTADGAQRSWRFTKLASSVAHVQFASAPNRLGDAA
CEEEECCCCCCCEEEEEEHHCCCEEECCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHH
AAGLTGITQVVADDGSGKNLATYEIDLTQ
HHHHHHHHHHEECCCCCCEEEEEEEEECC
>Mature Secondary Structure
MRLPLLSRRRVPAIAALASLAFILAACGGDDVTSPPVTPPAAQAPVGTTATLALLETTDL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
HTNVLSYDYFKLAADNSLGFERVSTLIAQARKQYPNTLLLDNGDTIQGTALSDYQALVKP
HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEECCCHHHHHHHHCC
VSCDQTLAIYKVMNAAKFDGGGIGNHEFNYGLPYLSQVTGNTFEVDGLPAPAQQKKCAGP
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHCCCCC
NFPQVLANVISAKTNAPLFTPYTILTRTVTATTPDGKTVSAPVKIGIIGFTPPAIMNWDK
CHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCEEECCEEEEEEECCCHHHCCCCH
RWLDGKVYTTGLKEAAEKYVPEMRAKGADLVVAISHGGLDNSAYSPTMENGSWWLSKVTG
HHCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCC
IDAMLIGHSHQVFPDANSTVSQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVIKLGLKFD
CEEEEECCCCEECCCCCCCHHHCCCCCHHHHCCCCCCCHHHHHHHCCCCCCEEEEEEEEC
GKTWSVDKSQTTVEARPIQNADKSYVAADPSVSAAIAAEHQATIDYVKTPIGSTDYRMNS
CCEEECCCCCCEEEECCCCCCCCCEEECCCCCCEEEECCCHHHHHHHHCCCCCCCCEECC
YFADVGDPGAIQIVNEAQADYVKTYVQANLPQYASLPVLSVSAPFKSGFGGGTDYTDVAP
EEECCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
GALAINNAADLYLYPNTVYAVKVSGADVKNWLETAAKRFNRIDPTKATVQPLVSTFPGYN
CEEEECCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
FDMFTSADLAYEIDVTQPVGSRIKNLTYKGAAIDPNAQFIVATNNYRASGGGNFPGLDGS
EEEEECCCEEEEEECCCHHHHHHHCCEECCCEECCCCEEEEEECCEECCCCCCCCCCCCC
KTIFASPDANRDVLIAFVKQRGKITRTADGAQRSWRFTKLASSVAHVQFASAPNRLGDAA
CEEEECCCCCCCEEEEEEHHCCCEEECCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHH
AAGLTGITQVVADDGSGKNLATYEIDLTQ
HHHHHHHHHHEECCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3005231; 7610040; 9278503; 2172762; 9298646 [H]