| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is 78067482
Identifier: 78067482
GI number: 78067482
Start: 3147880
End: 3148707
Strand: Direct
Name: 78067482
Synonym: Bcep18194_A6013
Alternate gene names: NA
Gene position: 3147880-3148707 (Clockwise)
Preceding gene: 78067481
Following gene: 78067483
Centisome position: 85.21
GC content: 67.51
Gene sequence:
>828_bases ATGACGCAGGCCTTCCATTTTTCGCTGAACCGGATGAGCGCACCACGCTTGCCCTTCGACCGTTACGTCGCGCTATGCCG GCGCCTCGGCGTCGACACGATCGAGATCCGCAACGATCTCGACGGCGTCGAGATCGCCGACGGCACGCCGGCCGTCGCCG TACGCGCGACGGCCGAAGCCGGCGGCGTGACGATCCTGACGATCAACGCGCTGCAGCGCTTCGAGCAATGGAACGCCGAG CGCGCAGACGAGGCGACCGTGCTGGCCGACTACGCGACGCAATGCGGCGCGCGTGCGCTGGTGCTGTGCCCGACCAACAG CCTGAGCGACACGCGCGGCGCGGACGAGCGCCACGCGGATCTCGTGAAGGCACTGAAGGCGCTCAAGCCGATCCTCGACG CGCGTGGCCTGCTCGGCTTCATCGAACCGCTCGGTTTCGAGGAGTGCGCGCTGCGCCGCAAGTCGGATGCGGTGAAGGGC ATCTACGACGCGGCGGGCGAGCAGGTGTTCCGGCTCGTGCACGACACGTTTCACCACCACCTGTCGGGCGAGGACATCTT CTTTCCGAACCTGACGGGCCTCGTGCACATCTCGGGCGTCGAGGAAGACGACCTGCCGGTCGACCGGATGCGCGACAGCC ATCGCGTGCTGGTCGGCGGCGCCGACCGGCTCGGCAATATCCGGCAACTGCGCGAACTGCTCGCGCGCGGCTATCGCGGC GCGTTCTCGTTCGAGCCGTTCGCAAACGAAATCGCCGAAGCCGACGACATCGAGGACCGGCTGCGTTCGAGCATCGACTA CGTGCGCGGTGAGCTGGCGGCTCAATGA
Upstream 100 bases:
>100_bases GACACGTGGCACACCCTCGCCGCGCCACCGACAGCCGACCTCGCGCGCACCGGCACCTGATTCGAACCCCGCCCCCCACT CGAACCCCAAGGACAGAACG
Downstream 100 bases:
>100_bases CTGCCGCCACGGCGTGCGGTCGACTTGAACCACGCGCCGGCGGAAAACCACAACATCAACAGGAGAACGGAATGATCGAA TTCGCGTTGTTCGGCGCGGG
Product: xylose isomerase-like TIM barrel
Products: NA
Alternate protein names: Xylose Isomerase Domain Protein TIM Barrel; IolI Protein; Cytoplasmic Protein; Myo-Inositol Catabolism Protein; Sugar Epimerase; Sugar Epimerase Protein; Xylose Isomerase-Like TIM Barrel; Protein IolI; Protein Implicated IN Myo-Inositol Catabolique Pathway; Protein Implicated In Myo-Inositol Catabolique Pathway; IolL Protein; Myo-Inositol Catabolism Protein IolI
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MTQAFHFSLNRMSAPRLPFDRYVALCRRLGVDTIEIRNDLDGVEIADGTPAVAVRATAEAGGVTILTINALQRFEQWNAE RADEATVLADYATQCGARALVLCPTNSLSDTRGADERHADLVKALKALKPILDARGLLGFIEPLGFEECALRRKSDAVKG IYDAAGEQVFRLVHDTFHHHLSGEDIFFPNLTGLVHISGVEEDDLPVDRMRDSHRVLVGGADRLGNIRQLRELLARGYRG AFSFEPFANEIAEADDIEDRLRSSIDYVRGELAAQ
Sequences:
>Translated_275_residues MTQAFHFSLNRMSAPRLPFDRYVALCRRLGVDTIEIRNDLDGVEIADGTPAVAVRATAEAGGVTILTINALQRFEQWNAE RADEATVLADYATQCGARALVLCPTNSLSDTRGADERHADLVKALKALKPILDARGLLGFIEPLGFEECALRRKSDAVKG IYDAAGEQVFRLVHDTFHHHLSGEDIFFPNLTGLVHISGVEEDDLPVDRMRDSHRVLVGGADRLGNIRQLRELLARGYRG AFSFEPFANEIAEADDIEDRLRSSIDYVRGELAAQ >Mature_274_residues TQAFHFSLNRMSAPRLPFDRYVALCRRLGVDTIEIRNDLDGVEIADGTPAVAVRATAEAGGVTILTINALQRFEQWNAER ADEATVLADYATQCGARALVLCPTNSLSDTRGADERHADLVKALKALKPILDARGLLGFIEPLGFEECALRRKSDAVKGI YDAAGEQVFRLVHDTFHHHLSGEDIFFPNLTGLVHISGVEEDDLPVDRMRDSHRVLVGGADRLGNIRQLRELLARGYRGA FSFEPFANEIAEADDIEDRLRSSIDYVRGELAAQ
Specific function: Unknown
COG id: COG4130
COG function: function code G; Predicted sugar epimerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30386; Mature: 30254
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQAFHFSLNRMSAPRLPFDRYVALCRRLGVDTIEIRNDLDGVEIADGTPAVAVRATAEA CCCEEEEEHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCCEEEEEECCC GGVTILTINALQRFEQWNAERADEATVLADYATQCGARALVLCPTNSLSDTRGADERHAD CCEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHH LVKALKALKPILDARGLLGFIEPLGFEECALRRKSDAVKGIYDAAGEQVFRLVHDTFHHH HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSGEDIFFPNLTGLVHISGVEEDDLPVDRMRDSHRVLVGGADRLGNIRQLRELLARGYRG CCCCCEECCCCCEEEEECCCCCCCCCHHHHCCCCEEEEECHHHCCCHHHHHHHHHHCCCC AFSFEPFANEIAEADDIEDRLRSSIDYVRGELAAQ CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TQAFHFSLNRMSAPRLPFDRYVALCRRLGVDTIEIRNDLDGVEIADGTPAVAVRATAEA CCEEEEEHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCCEEEEEECCC GGVTILTINALQRFEQWNAERADEATVLADYATQCGARALVLCPTNSLSDTRGADERHAD CCEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHH LVKALKALKPILDARGLLGFIEPLGFEECALRRKSDAVKGIYDAAGEQVFRLVHDTFHHH HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSGEDIFFPNLTGLVHISGVEEDDLPVDRMRDSHRVLVGGADRLGNIRQLRELLARGYRG CCCCCEECCCCCEEEEECCCCCCCCCHHHHCCCCEEEEECHHHCCCHHHHHHHHHHCCCC AFSFEPFANEIAEADDIEDRLRSSIDYVRGELAAQ CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA