| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is dac [H]
Identifier: 78067419
GI number: 78067419
Start: 3078229
End: 3079761
Strand: Direct
Name: dac [H]
Synonym: Bcep18194_A5950
Alternate gene names: 78067419
Gene position: 3078229-3079761 (Clockwise)
Preceding gene: 78067412
Following gene: 78067420
Centisome position: 83.33
GC content: 69.54
Gene sequence:
>1533_bases ATGCCGATTTCCGATCTTTCCACCCGGTTCGCCCCCCGTGCCCGCGTCTGCCTGCGGGCGGCCGCCATCGTCGCCACCTG CACCGCCCTCGCCTTCGCACCGTCCGCGCAGGCCCGCAAGAAATCCCACAAGGAAGCGCGCAAGACCACGGTCGTGTCGC CCGCCGCGCGTGCGGCCGGCCTGCCGGCGTCCGTGCTCGTCGCGCTGCAGCGCGCGAAGGTGCCGGCGTCGGCGATGAGC GTCGTCGTCGAGCGCGTCGGCGATCCGGAACCGCTGATCGCGTGGAATGCGAACCGGCCGATGATGCCCGCCTCGACGAT GAAGCTCGTGACGACCTTCTCGGGCCTGTCGATCCTCGGCCCCGACTACCGCTGGCGCACGACCGCCTACACGGACGGCA CGATCGACCCCGACGGCACGCTGCAGGGCAACCTGTACATCAAGGGCACCGGCGATCCGAAGCTCGTGCCCGAAGAGCTG ATCGACCTCGTCGACAAGCTCCGCAAGGCCGGCGTCAAGCGCGTGGCCGGCGGCCTGGTGCTCGACAAGAGCTACTTCGC GACCTCGACGCGCGATCTCCCTTCGTTCGACGACGACGCGAGCGCACCGTACAACGTCGGCCCCGATCCGCTGCTGTACG CATTCAAGGCCGTGTCGTTCACGGTCACGCCGGGCGACGACGGCAAGGTGGCCGTCGACGTGCTGCCGCCGCTCGCGGAC CTGTCGATCGACAACCAGCTGGTCGAAGGCTCGGGCTCGTGCAGCGCGGCCGCCGCGGCCGCGCGTCCGACGCTGACCGC CGGCAGCGGGATCATGACCGCCTCGTTCGCCGGCGACTACCCACTGCGCTGCGGCGCGCACACGACCAACCTCGCGATCC TCGATCACACGACGTTCTTCGCGCGCGGCTTCCTTGCGCTATGGCAGCAGGACGGCGGCACGATCACGGGGCCGGTGAGC GAAGGCAAGGTGCCGACCACCGCGCGGCCCCTCGCCGTGCATCACAGCCCGGTGCTCGGCAGCATCGTCTACGACATCAA CAAGTTCAGCAACAACGTGATGGCGCGCAACCTGTTCCTGACGATCGGCGCGGTCAGCGGCAAGCCGCCCGCGACGCCCG AGCAGTCGAGCCGCGTGATCCAGGCGTTCCTGCAGAAGAACGGCATCGCGATGCCCGACCTCGTGCTCGAAAACGGCTCG GGCCTGTCGCGCGAAGAGCACGTGAGCGCGCTGTCGCTCGCCGCGCTGCTGCAGGCCGCAAACGCGAGCCCGGTCGCGCA GGCCTTCGTCGATTCGCTGCCGATCGCCGGCATCGACGGCACGATGAAGAACCGCCTCACCAACGCCGGCGTGCTCGGCA ACGCGCACATCAAGACCGGCACGCTGCGCGACGTGCGCGCGATCGCCGGCTACGTCGCCGGTGCGGACGGCCAGAGCTAC ATCGTCGTGAGCTTCATCAACAACGATCACGCGGAAGCCGCGCGCGCCGCGCACGACTCGCTGCTCGAGTGGATCTACTC GGGCGCGCACTGA
Upstream 100 bases:
>100_bases AAGGCGGATTGCAAGGGGGCTGTCCGGACTTGTCTCTACAATATGCGCTTTGGCGCCGCGCGCGCCCTGCCCGAACGTCG TGCTTCTCCCGTATTCGCTC
Downstream 100 bases:
>100_bases CGTTTCCGCGCCGCGACACACGGCGCGCCGGTGGCCTGCTGCCGGTGCGCTCGTCGCGCCTGTGCATCGGGGCGGCACGC GTACAACGGGTCGCCCCGGC
Product: D-alanyl-D-alanine carboxypeptidase PBP3
Products: NA
Alternate protein names: DD-carboxypeptidase; DD-peptidase; Penicillin-binding protein; PBP [H]
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MPISDLSTRFAPRARVCLRAAAIVATCTALAFAPSAQARKKSHKEARKTTVVSPAARAAGLPASVLVALQRAKVPASAMS VVVERVGDPEPLIAWNANRPMMPASTMKLVTTFSGLSILGPDYRWRTTAYTDGTIDPDGTLQGNLYIKGTGDPKLVPEEL IDLVDKLRKAGVKRVAGGLVLDKSYFATSTRDLPSFDDDASAPYNVGPDPLLYAFKAVSFTVTPGDDGKVAVDVLPPLAD LSIDNQLVEGSGSCSAAAAAARPTLTAGSGIMTASFAGDYPLRCGAHTTNLAILDHTTFFARGFLALWQQDGGTITGPVS EGKVPTTARPLAVHHSPVLGSIVYDINKFSNNVMARNLFLTIGAVSGKPPATPEQSSRVIQAFLQKNGIAMPDLVLENGS GLSREEHVSALSLAALLQAANASPVAQAFVDSLPIAGIDGTMKNRLTNAGVLGNAHIKTGTLRDVRAIAGYVAGADGQSY IVVSFINNDHAEAARAAHDSLLEWIYSGAH
Sequences:
>Translated_510_residues MPISDLSTRFAPRARVCLRAAAIVATCTALAFAPSAQARKKSHKEARKTTVVSPAARAAGLPASVLVALQRAKVPASAMS VVVERVGDPEPLIAWNANRPMMPASTMKLVTTFSGLSILGPDYRWRTTAYTDGTIDPDGTLQGNLYIKGTGDPKLVPEEL IDLVDKLRKAGVKRVAGGLVLDKSYFATSTRDLPSFDDDASAPYNVGPDPLLYAFKAVSFTVTPGDDGKVAVDVLPPLAD LSIDNQLVEGSGSCSAAAAAARPTLTAGSGIMTASFAGDYPLRCGAHTTNLAILDHTTFFARGFLALWQQDGGTITGPVS EGKVPTTARPLAVHHSPVLGSIVYDINKFSNNVMARNLFLTIGAVSGKPPATPEQSSRVIQAFLQKNGIAMPDLVLENGS GLSREEHVSALSLAALLQAANASPVAQAFVDSLPIAGIDGTMKNRLTNAGVLGNAHIKTGTLRDVRAIAGYVAGADGQSY IVVSFINNDHAEAARAAHDSLLEWIYSGAH >Mature_509_residues PISDLSTRFAPRARVCLRAAAIVATCTALAFAPSAQARKKSHKEARKTTVVSPAARAAGLPASVLVALQRAKVPASAMSV VVERVGDPEPLIAWNANRPMMPASTMKLVTTFSGLSILGPDYRWRTTAYTDGTIDPDGTLQGNLYIKGTGDPKLVPEELI DLVDKLRKAGVKRVAGGLVLDKSYFATSTRDLPSFDDDASAPYNVGPDPLLYAFKAVSFTVTPGDDGKVAVDVLPPLADL SIDNQLVEGSGSCSAAAAAARPTLTAGSGIMTASFAGDYPLRCGAHTTNLAILDHTTFFARGFLALWQQDGGTITGPVSE GKVPTTARPLAVHHSPVLGSIVYDINKFSNNVMARNLFLTIGAVSGKPPATPEQSSRVIQAFLQKNGIAMPDLVLENGSG LSREEHVSALSLAALLQAANASPVAQAFVDSLPIAGIDGTMKNRLTNAGVLGNAHIKTGTLRDVRAIAGYVAGADGQSYI VVSFINNDHAEAARAAHDSLLEWIYSGAH
Specific function: Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors [H]
COG id: COG2027
COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S13 family [H]
Homologues:
Organism=Escherichia coli, GI1789573, Length=451, Percent_Identity=26.3858093126386, Blast_Score=139, Evalue=5e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR000667 [H]
Pfam domain/function: PF02113 Peptidase_S13 [H]
EC number: =3.4.16.4 [H]
Molecular weight: Translated: 53361; Mature: 53230
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPISDLSTRFAPRARVCLRAAAIVATCTALAFAPSAQARKKSHKEARKTTVVSPAARAAG CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCHHHHCC LPASVLVALQRAKVPASAMSVVVERVGDPEPLIAWNANRPMMPASTMKLVTTFSGLSILG CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEC PDYRWRTTAYTDGTIDPDGTLQGNLYIKGTGDPKLVPEELIDLVDKLRKAGVKRVAGGLV CCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEE LDKSYFATSTRDLPSFDDDASAPYNVGPDPLLYAFKAVSFTVTPGDDGKVAVDVLPPLAD EECCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEECCCCCCCEEEEECCCCCC LSIDNQLVEGSGSCSAAAAAARPTLTAGSGIMTASFAGDYPLRCGAHTTNLAILDHTTFF CCCCCCEECCCCCCCHHHHHCCCCEECCCCEEEEECCCCCCEECCCCCCEEEEEECHHHH ARGFLALWQQDGGTITGPVSEGKVPTTARPLAVHHSPVLGSIVYDINKFSNNVMARNLFL HHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEE TIGAVSGKPPATPEQSSRVIQAFLQKNGIAMPDLVLENGSGLSREEHVSALSLAALLQAA EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHC NASPVAQAFVDSLPIAGIDGTMKNRLTNAGVLGNAHIKTGTLRDVRAIAGYVAGADGQSY CCCHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCEEECCCHHHHHHHHHHHCCCCCCCE IVVSFINNDHAEAARAAHDSLLEWIYSGAH EEEEEECCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PISDLSTRFAPRARVCLRAAAIVATCTALAFAPSAQARKKSHKEARKTTVVSPAARAAG CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCHHHHCC LPASVLVALQRAKVPASAMSVVVERVGDPEPLIAWNANRPMMPASTMKLVTTFSGLSILG CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEC PDYRWRTTAYTDGTIDPDGTLQGNLYIKGTGDPKLVPEELIDLVDKLRKAGVKRVAGGLV CCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEE LDKSYFATSTRDLPSFDDDASAPYNVGPDPLLYAFKAVSFTVTPGDDGKVAVDVLPPLAD EECCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEECCCCCCCEEEEECCCCCC LSIDNQLVEGSGSCSAAAAAARPTLTAGSGIMTASFAGDYPLRCGAHTTNLAILDHTTFF CCCCCCEECCCCCCCHHHHHCCCCEECCCCEEEEECCCCCCEECCCCCCEEEEEECHHHH ARGFLALWQQDGGTITGPVSEGKVPTTARPLAVHHSPVLGSIVYDINKFSNNVMARNLFL HHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEE TIGAVSGKPPATPEQSSRVIQAFLQKNGIAMPDLVLENGSGLSREEHVSALSLAALLQAA EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHC NASPVAQAFVDSLPIAGIDGTMKNRLTNAGVLGNAHIKTGTLRDVRAIAGYVAGADGQSY CCCHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCEEECCCHHHHHHHHHHHCCCCCCCE IVVSFINNDHAEAARAAHDSLLEWIYSGAH EEEEEECCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1554361; 7305936 [H]