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The map label for this gene is abgR [H]

Identifier: 78067384

GI number: 78067384

Start: 3037180

End: 3038091

Strand: Direct

Name: abgR [H]

Synonym: Bcep18194_A5915

Alternate gene names: 78067384

Gene position: 3037180-3038091 (Clockwise)

Preceding gene: 78067379

Following gene: 78067385

Centisome position: 82.22

GC content: 70.61

Gene sequence:

>912_bases
ATGACTTTCGATCTCCGACAATTGCGCGCCTTCACGACGATCGTCGCGTGCGGCAGCCTCGGCCGCGCGGCCGACGCGCT
GCATGTGACGCAGCCGGCGCTGAGCCGGATCCTGAAGCGGCTCGAGGAACAGGTCGGTGCGCCCTTGTTCGAGCGCCACT
CGAAGGGCGTGCAGCTCACCGCGTTCGGCGACGCGTTGCTGCCGCATGCGACGCTGCTGCAGCACGAGGCCGAGCACGCG
CGTGAGGAGCTCGACGCGATGCGCGGGTTCGCGAAGGGCACGATCAAGGTCGGCACGGTGGGCAGCATCGCGAGCCTCGT
GCTGCCGGTCGCGGTGGGCCGCGTGCTCGACCGCTGGCCGAACCTGCGCGTCGAGATCATCGAAGGCGTGTGGGACCGGC
TCGCGGAAGGGCTGAACAAGCACGAGATCGATCTCGCGCTGTCCGCGCACGGGCCCGACACAGATGAAATCGTCGCGATT
CCCGAGTGCCGCTGGGAAGATCGCAGCCATATCGTTGCGGCGCCGCACCATCCGCTGCGCGCGCTCGGCCGCGCGCCGAC
GCTCGCCGATACGCTGCACGCGCGCTGGGCGATTCCGCCGCGCGGCACTGCGCCGTTCGACCACATGCGCGCGACCTTCG
ACGCGCACGGGCTCGCGCTGCCCGACATTGCGGTCGAGACGCGCTCCGTCACCACGCTGAAGAGCCTCGTCGCGCATGCC
GGCTTCCTGAGCTGGATGGCCGAGCCGATGTACGGCGCCGAGCAGCGCGCCGGCACGATCGACACACTGCCGGTGCGCGA
GGTCGTCGCGGTGCGCACGCTCACCGCGTTCCGGCGCCGCCACGGCATCCTGCCGGGACCGGCCGGCAAGCTGCTCGAGG
AACTCGTCGCGTTGACGCGCGAAGGACGCTGA

Upstream 100 bases:

>100_bases
CATGCTTGGCGCTCCTCGGTGGCTTGGCGGTTTCCACAGTATCGAAGCGCAAGCCATTCACCGATACTGTATTTTTTGCG
AAAAGCCATACCGTTCCGAC

Downstream 100 bases:

>100_bases
CGGCGCCTTTCGCACCGGCCGCCCGTTCGCGCCCTCCCCGTCCTGCCCGCACGCGCCGCCGCAGCGCACCATTGAAATGC
CGTTTCCCCGCCTTGACTTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MTFDLRQLRAFTTIVACGSLGRAADALHVTQPALSRILKRLEEQVGAPLFERHSKGVQLTAFGDALLPHATLLQHEAEHA
REELDAMRGFAKGTIKVGTVGSIASLVLPVAVGRVLDRWPNLRVEIIEGVWDRLAEGLNKHEIDLALSAHGPDTDEIVAI
PECRWEDRSHIVAAPHHPLRALGRAPTLADTLHARWAIPPRGTAPFDHMRATFDAHGLALPDIAVETRSVTTLKSLVAHA
GFLSWMAEPMYGAEQRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPAGKLLEELVALTREGR

Sequences:

>Translated_303_residues
MTFDLRQLRAFTTIVACGSLGRAADALHVTQPALSRILKRLEEQVGAPLFERHSKGVQLTAFGDALLPHATLLQHEAEHA
REELDAMRGFAKGTIKVGTVGSIASLVLPVAVGRVLDRWPNLRVEIIEGVWDRLAEGLNKHEIDLALSAHGPDTDEIVAI
PECRWEDRSHIVAAPHHPLRALGRAPTLADTLHARWAIPPRGTAPFDHMRATFDAHGLALPDIAVETRSVTTLKSLVAHA
GFLSWMAEPMYGAEQRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPAGKLLEELVALTREGR
>Mature_302_residues
TFDLRQLRAFTTIVACGSLGRAADALHVTQPALSRILKRLEEQVGAPLFERHSKGVQLTAFGDALLPHATLLQHEAEHAR
EELDAMRGFAKGTIKVGTVGSIASLVLPVAVGRVLDRWPNLRVEIIEGVWDRLAEGLNKHEIDLALSAHGPDTDEIVAIP
ECRWEDRSHIVAAPHHPLRALGRAPTLADTLHARWAIPPRGTAPFDHMRATFDAHGLALPDIAVETRSVTTLKSLVAHAG
FLSWMAEPMYGAEQRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPAGKLLEELVALTREGR

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=284, Percent_Identity=29.5774647887324, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87081904, Length=262, Percent_Identity=29.0076335877863, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693105, Length=161, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789506, Length=294, Percent_Identity=25.5102040816327, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI157672245, Length=174, Percent_Identity=27.0114942528736, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=26.1016949152542, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI48994962, Length=158, Percent_Identity=29.746835443038, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788296, Length=225, Percent_Identity=27.1111111111111, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788887, Length=156, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788626, Length=152, Percent_Identity=30.9210526315789, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=152, Percent_Identity=30.2631578947368, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789639, Length=137, Percent_Identity=26.2773722627737, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787530, Length=184, Percent_Identity=24.4565217391304, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789204, Length=181, Percent_Identity=26.5193370165746, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=152, Percent_Identity=30.2631578947368, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790399, Length=159, Percent_Identity=23.8993710691824, Blast_Score=61, Evalue=9e-11,
Organism=Escherichia coli, GI2367136, Length=236, Percent_Identity=26.6949152542373, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33096; Mature: 32964

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFDLRQLRAFTTIVACGSLGRAADALHVTQPALSRILKRLEEQVGAPLFERHSKGVQLT
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEE
AFGDALLPHATLLQHEAEHAREELDAMRGFAKGTIKVGTVGSIASLVLPVAVGRVLDRWP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCC
NLRVEIIEGVWDRLAEGLNKHEIDLALSAHGPDTDEIVAIPECRWEDRSHIVAAPHHPLR
CCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCEEECCCHHHH
ALGRAPTLADTLHARWAIPPRGTAPFDHMRATFDAHGLALPDIAVETRSVTTLKSLVAHA
HHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
GFLSWMAEPMYGAEQRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPAGKLLEELVALTR
HHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
EGR
CCC
>Mature Secondary Structure 
TFDLRQLRAFTTIVACGSLGRAADALHVTQPALSRILKRLEEQVGAPLFERHSKGVQLT
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEE
AFGDALLPHATLLQHEAEHAREELDAMRGFAKGTIKVGTVGSIASLVLPVAVGRVLDRWP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCC
NLRVEIIEGVWDRLAEGLNKHEIDLALSAHGPDTDEIVAIPECRWEDRSHIVAAPHHPLR
CCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCEEECCCHHHH
ALGRAPTLADTLHARWAIPPRGTAPFDHMRATFDAHGLALPDIAVETRSVTTLKSLVAHA
HHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
GFLSWMAEPMYGAEQRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPAGKLLEELVALTR
HHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
EGR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]