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The map label for this gene is yhjC [H]

Identifier: 78067284

GI number: 78067284

Start: 2931393

End: 2932328

Strand: Reverse

Name: yhjC [H]

Synonym: Bcep18194_A5815

Alternate gene names: 78067284

Gene position: 2932328-2931393 (Counterclockwise)

Preceding gene: 78067285

Following gene: 78067282

Centisome position: 79.38

GC content: 68.16

Gene sequence:

>936_bases
ATGGACAAGCTGGATCAGGTCAGAATCTTCCTGCAGGTTGCCGAGATGGGCAGCTTCATCAAGGCCGCCCATGCGCTCGA
CGTGCCGCGCGCGACCGTGTCGGCGGCCGTGCAGCAGCTCGAGACGGGGCTCGGCACACGCCTCCTGCACCGCACGACAC
GCCAGGTGCAGCTGACCGCCGATGGCACGCTGCTGCTCGAACGCGGCCGGCGCCTGCTGTCGGAGGCCGACGAACTCGAC
CGCCTGTTCCGCGGCCGCGACCGCGACGTGATCGGCCGGCTGACCGTCGATGTGCCGAGCCGGATCGCGCGCCGCATGGT
GGCGCCCGCGCTGCCGTCGCTGTTTCACCGTTACCCGAAGCTGCAACTGTCGCTCGGCTCGACCGATCGTTCGATCGACC
TGGTACAGGAGGGCGTCGACTGCGCGATTCGCGTGGGGCGGCTCGCGGAAAGCAGCCTCGTCGTGCGGCCGCTCGGGCAG
TTCACGCTGATCAACTGCGCGAGCCCCGACTACCTGCGCGAATGCGGCGTGCCCGAGCATCCGGATGCGCTTGCGCACGG
ACACTGGGCGATCGGCTATGTGTCGCCGACGACCGGGCGCGAACTCGACTGGGAATATTGTGCGGACGGGGAGCGGCACA
CACTCGGGCTGCCGAGCCGCGTGATCGTCAACAACGCCGAAACCTATATCGCCAGCTGCATCGCCGGAATGGGGCTGATC
CAGATTCCGCGCTTCGACGTCCAACATCTGCTCGACAGCGGCGCACTGGTCGACGTGATGCCCGACCACCGTGCCGCACC
GATGGACGTGTCGGCCGTCTATCCGCATCGGCGCCATCGTTCGCGCCGGCTCAATGCGTTCATCGAATGGTTCGGGGAAC
TGATGGCGAACGCGCTGACGAGCGGCGGGGAGGGCGCGGGCGCGGAGGGCGACTGA

Upstream 100 bases:

>100_bases
TGGCCTCGCGGCTGCGTGCCCGTTTTCTCTGTGCCGCCGGACCTCGCCGCGATGCGTGACGGCTGGCGGCGGCGTTCGTC
CGAACCTGGGTTCTCTGCCG

Downstream 100 bases:

>100_bases
CCGGCACGGCCGGTTGCCGTCACGCGCCGTCGTGCGTGTTTCAGTCGGGCAGCGCCGCGAACTGCCGGCTGCGCCCGGTT
TCCCGCACCGCATCGATCAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETGLGTRLLHRTTRQVQLTADGTLLLERGRRLLSEADELD
RLFRGRDRDVIGRLTVDVPSRIARRMVAPALPSLFHRYPKLQLSLGSTDRSIDLVQEGVDCAIRVGRLAESSLVVRPLGQ
FTLINCASPDYLRECGVPEHPDALAHGHWAIGYVSPTTGRELDWEYCADGERHTLGLPSRVIVNNAETYIASCIAGMGLI
QIPRFDVQHLLDSGALVDVMPDHRAAPMDVSAVYPHRRHRSRRLNAFIEWFGELMANALTSGGEGAGAEGD

Sequences:

>Translated_311_residues
MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETGLGTRLLHRTTRQVQLTADGTLLLERGRRLLSEADELD
RLFRGRDRDVIGRLTVDVPSRIARRMVAPALPSLFHRYPKLQLSLGSTDRSIDLVQEGVDCAIRVGRLAESSLVVRPLGQ
FTLINCASPDYLRECGVPEHPDALAHGHWAIGYVSPTTGRELDWEYCADGERHTLGLPSRVIVNNAETYIASCIAGMGLI
QIPRFDVQHLLDSGALVDVMPDHRAAPMDVSAVYPHRRHRSRRLNAFIEWFGELMANALTSGGEGAGAEGD
>Mature_311_residues
MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETGLGTRLLHRTTRQVQLTADGTLLLERGRRLLSEADELD
RLFRGRDRDVIGRLTVDVPSRIARRMVAPALPSLFHRYPKLQLSLGSTDRSIDLVQEGVDCAIRVGRLAESSLVVRPLGQ
FTLINCASPDYLRECGVPEHPDALAHGHWAIGYVSPTTGRELDWEYCADGERHTLGLPSRVIVNNAETYIASCIAGMGLI
QIPRFDVQHLLDSGALVDVMPDHRAAPMDVSAVYPHRRHRSRRLNAFIEWFGELMANALTSGGEGAGAEGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=39.1304347826087, Blast_Score=237, Evalue=8e-64,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=34.1137123745819, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=29.1946308724832, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1789440, Length=303, Percent_Identity=27.7227722772277, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=30.5369127516779, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=26.9230769230769, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787589, Length=281, Percent_Identity=26.3345195729537, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786713, Length=327, Percent_Identity=29.6636085626911, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790011, Length=295, Percent_Identity=22.7118644067797, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1789173, Length=166, Percent_Identity=31.3253012048193, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=170, Percent_Identity=28.2352941176471, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34257; Mature: 34257

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETGLGTRLLHRTTRQVQLTA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
DGTLLLERGRRLLSEADELDRLFRGRDRDVIGRLTVDVPSRIARRMVAPALPSLFHRYPK
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCC
LQLSLGSTDRSIDLVQEGVDCAIRVGRLAESSLVVRPLGQFTLINCASPDYLRECGVPEH
EEEEECCCCCHHHHHHHCHHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHCCCCCC
PDALAHGHWAIGYVSPTTGRELDWEYCADGERHTLGLPSRVIVNNAETYIASCIAGMGLI
CCHHCCCCEEEEEECCCCCCCCCHHHHCCCCCEECCCCCCEEECCHHHHHHHHHHCCCEE
QIPRFDVQHLLDSGALVDVMPDHRAAPMDVSAVYPHRRHRSRRLNAFIEWFGELMANALT
ECCCHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SGGEGAGAEGD
CCCCCCCCCCC
>Mature Secondary Structure
MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETGLGTRLLHRTTRQVQLTA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
DGTLLLERGRRLLSEADELDRLFRGRDRDVIGRLTVDVPSRIARRMVAPALPSLFHRYPK
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCC
LQLSLGSTDRSIDLVQEGVDCAIRVGRLAESSLVVRPLGQFTLINCASPDYLRECGVPEH
EEEEECCCCCHHHHHHHCHHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHCCCCCC
PDALAHGHWAIGYVSPTTGRELDWEYCADGERHTLGLPSRVIVNNAETYIASCIAGMGLI
CCHHCCCCEEEEEECCCCCCCCCHHHHCCCCCEECCCCCCEEECCHHHHHHHHHHCCCEE
QIPRFDVQHLLDSGALVDVMPDHRAAPMDVSAVYPHRRHRSRRLNAFIEWFGELMANALT
ECCCHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SGGEGAGAEGD
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]