BacMap

Definition	Burkholderia sp. 383 chromosome 1, complete genome.
Accession	NC_007510
Length	3,694,126

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The map label for this gene is ygfF [C]

Identifier: 78067280

GI number: 78067280

Start: 2927751

End: 2928488

Strand: Direct

Name: ygfF [C]

Synonym: Bcep18194_A5811

Alternate gene names: 78067280

Gene position: 2927751-2928488 (Clockwise)

Preceding gene: 78067278

Following gene: 78067281

Centisome position: 79.25

GC content: 70.6

Gene sequence:

>738_bases
ATGAGCACATCGGAACAGGTCGCCCTCGTGACGGGCTCGTCGCGCGGCATCGGCGCGGAAATCGCCCGCCGTCTCGCCCG
TGACGGTTTCAGGGTCGTCGTGAACTATGCCGGCGGCGCCGGCCCGGCCCGGGAAGTGGTCGACGCGATCGTCACCGACG
GCGGCACGGCCGTCGCGGTGCAGGCGGACGTCGCCGACCCGGTGGCGGTGGCCGCGCTGTTCGACGCGGCCGAGCAGGCA
TTCGGCCGGATCGACGTCGTCGTCAACAGTGCGGGCGTGATGAAGCTCGCGCCCCTCGCCGAGTTCGACGACGCAGCGTT
CGACCAGACCGTCGCAATCAACCTGAAGGGCGCGTTCAACGTCAGCCGCGAGGCAGCGAAGCGCGTGCGCGACGGCGGCC
GCATCGTCAACCTGACCTCGAGCGTGATCGGCATGCGCCTGCCGACCTACGGCGTGTACATCGCGACCAAGGCCGCTGTC
GAGGGCATGACGCAGGTGCTCGCGCAGGAGATGCGCGGTCGCGGCATCAGCGTGAACGCCGTCGCACCGGGCCCGGTGGC
GACCGAGCTGTTCCTGCAAGGCAAGAGCGCCGAACTCGTCGACCGGATGGCGAAGATGAACCCGCTGGAGCGGCTCGGCC
AGCCGGCCGACATCGCCAGCGTCGTCGCGTTCCTCGCCGGCCCCGACGGCGCGTGGGTCAACGGTCAGATCCTGCGCGCC
AACGGCGGCATGTGCTGA

Upstream 100 bases:

>100_bases
ATTCTTGATCTGATCATTATTCATTATTTTTATTGACTGAGGAAGCCTACATTAGTCCTGTCGCCGGATCACACGGCACT
CACGAATCAAGGAGCAGGAC

Downstream 100 bases:

>100_bases
CCGGCCGCCCGTCACGCCCCCCTCTTACCGGAGATCGATCATGAAGGAAGTCATTCTCGTCACGGGCGCGTCCAGCGGCT
TCGGCCTGCTGTCGGCCCAG

Product: Short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MSTSEQVALVTGSSRGIGAEIARRLARDGFRVVVNYAGGAGPAREVVDAIVTDGGTAVAVQADVADPVAVAALFDAAEQA
FGRIDVVVNSAGVMKLAPLAEFDDAAFDQTVAINLKGAFNVSREAAKRVRDGGRIVNLTSSVIGMRLPTYGVYIATKAAV
EGMTQVLAQEMRGRGISVNAVAPGPVATELFLQGKSAELVDRMAKMNPLERLGQPADIASVVAFLAGPDGAWVNGQILRA
NGGMC

Sequences:

>Translated_245_residues
MSTSEQVALVTGSSRGIGAEIARRLARDGFRVVVNYAGGAGPAREVVDAIVTDGGTAVAVQADVADPVAVAALFDAAEQA
FGRIDVVVNSAGVMKLAPLAEFDDAAFDQTVAINLKGAFNVSREAAKRVRDGGRIVNLTSSVIGMRLPTYGVYIATKAAV
EGMTQVLAQEMRGRGISVNAVAPGPVATELFLQGKSAELVDRMAKMNPLERLGQPADIASVVAFLAGPDGAWVNGQILRA
NGGMC
>Mature_244_residues
STSEQVALVTGSSRGIGAEIARRLARDGFRVVVNYAGGAGPAREVVDAIVTDGGTAVAVQADVADPVAVAALFDAAEQAF
GRIDVVVNSAGVMKLAPLAEFDDAAFDQTVAINLKGAFNVSREAAKRVRDGGRIVNLTSSVIGMRLPTYGVYIATKAAVE
GMTQVLAQEMRGRGISVNAVAPGPVATELFLQGKSAELVDRMAKMNPLERLGQPADIASVVAFLAGPDGAWVNGQILRAN
GGMC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=35.3846153846154, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=38, Blast_Score=114, Evalue=6e-26,
Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=31.8548387096774, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI5031737, Length=237, Percent_Identity=30.379746835443, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI19923817, Length=248, Percent_Identity=27.0161290322581, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=29.3650793650794, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI59889578, Length=195, Percent_Identity=31.7948717948718, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=36.2694300518135, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI109715829, Length=232, Percent_Identity=27.5862068965517, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI7705925, Length=240, Percent_Identity=30.4166666666667, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI223718074, Length=219, Percent_Identity=32.4200913242009, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI7657478, Length=199, Percent_Identity=31.6582914572864, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI31542939, Length=255, Percent_Identity=28.2352941176471, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI4503301, Length=203, Percent_Identity=27.0935960591133, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI40254986, Length=187, Percent_Identity=28.3422459893048, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=30.1587301587302, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=35.3658536585366, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=35.3413654618474, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=36.3265306122449, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=34.3096234309623, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789208, Length=255, Percent_Identity=32.9411764705882, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=32.520325203252, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=31.3253012048193, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1787905, Length=240, Percent_Identity=33.75, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1790717, Length=239, Percent_Identity=30.1255230125523, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1789378, Length=239, Percent_Identity=31.3807531380753, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=30.1158301158301, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1786701, Length=194, Percent_Identity=33.5051546391753, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786812, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787526, Length=258, Percent_Identity=27.1317829457364, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=30.4878048780488, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17536651, Length=246, Percent_Identity=30.8943089430894, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17536025, Length=246, Percent_Identity=30.4878048780488, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=28.8537549407115, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=32.258064516129, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17561272, Length=200, Percent_Identity=32, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=29.811320754717, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=30.0813008130081, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=29.7709923664122, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=30.2040816326531, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=29.6, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=258, Percent_Identity=28.6821705426357, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=29.9610894941634, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=31.5384615384615, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=28.5140562248996, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=30.8270676691729, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=30.5343511450382, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=30.6878306878307, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=253, Percent_Identity=27.6679841897233, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=244, Percent_Identity=27.8688524590164, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=31.1787072243346, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=34.8958333333333, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=250, Percent_Identity=28.4, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=28.7878787878788, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=252, Percent_Identity=28.1746031746032, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=258, Percent_Identity=28.6821705426357, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=28.1954887218045, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=28.9473684210526, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=29.811320754717, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17558628, Length=189, Percent_Identity=30.6878306878307, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=271, Percent_Identity=29.1512915129151, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=224, Percent_Identity=30.3571428571429, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=27.3809523809524, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=26.8482490272374, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71997099, Length=227, Percent_Identity=29.5154185022026, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=32.8205128205128, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6324126, Length=168, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322067, Length=193, Percent_Identity=30.0518134715026, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=250, Percent_Identity=28.8, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=36.2903225806452, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=32.5490196078431, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI23397609, Length=261, Percent_Identity=32.9501915708812, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=30.9803921568627, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=29.6, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=28.2352941176471, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=29.2490118577075, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=31.6793893129771, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21357673, Length=186, Percent_Identity=32.7956989247312, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24648944, Length=250, Percent_Identity=32.8, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24644337, Length=259, Percent_Identity=30.5019305019305, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007236, Length=198, Percent_Identity=31.3131313131313, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24641232, Length=252, Percent_Identity=29.3650793650794, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007234, Length=204, Percent_Identity=32.3529411764706, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI18859837, Length=236, Percent_Identity=31.3559322033898, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI281364494, Length=253, Percent_Identity=27.6679841897233, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=28.6549707602339, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007238, Length=178, Percent_Identity=30.8988764044944, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221331218, Length=203, Percent_Identity=31.0344827586207, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24665243, Length=203, Percent_Identity=31.0344827586207, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24663911, Length=202, Percent_Identity=29.2079207920792, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24648693, Length=203, Percent_Identity=28.0788177339901, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI21355889, Length=203, Percent_Identity=28.0788177339901, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI221331216, Length=214, Percent_Identity=29.9065420560748, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24665247, Length=214, Percent_Identity=29.9065420560748, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007232, Length=181, Percent_Identity=33.1491712707182, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25256; Mature: 25125

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSEQVALVTGSSRGIGAEIARRLARDGFRVVVNYAGGAGPAREVVDAIVTDGGTAVAV
CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEE
QADVADPVAVAALFDAAEQAFGRIDVVVNSAGVMKLAPLAEFDDAAFDQTVAINLKGAFN
EECCCCHHHHHHHHHHHHHHHCEEEEEEECCCCEEECCCCCCCCCCCCCEEEEEECCCCC
VSREAAKRVRDGGRIVNLTSSVIGMRLPTYGVYIATKAAVEGMTQVLAQEMRGRGISVNA
CCHHHHHHHHCCCEEEEEHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEE
VAPGPVATELFLQGKSAELVDRMAKMNPLERLGQPADIASVVAFLAGPDGAWVNGQILRA
ECCCCHHHHHEECCCCHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCCCEECCEEEEC
NGGMC
CCCCC
>Mature Secondary Structure 
STSEQVALVTGSSRGIGAEIARRLARDGFRVVVNYAGGAGPAREVVDAIVTDGGTAVAV
CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEE
QADVADPVAVAALFDAAEQAFGRIDVVVNSAGVMKLAPLAEFDDAAFDQTVAINLKGAFN
EECCCCHHHHHHHHHHHHHHHCEEEEEEECCCCEEECCCCCCCCCCCCCEEEEEECCCCC
VSREAAKRVRDGGRIVNLTSSVIGMRLPTYGVYIATKAAVEGMTQVLAQEMRGRGISVNA
CCHHHHHHHHCCCEEEEEHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEE
VAPGPVATELFLQGKSAELVDRMAKMNPLERLGQPADIASVVAFLAGPDGAWVNGQILRA
ECCCCHHHHHEECCCCHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCCCEECCEEEEC
NGGMC
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]