| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is ilvD2
Identifier: 78067262
GI number: 78067262
Start: 2906964
End: 2908637
Strand: Direct
Name: ilvD2
Synonym: Bcep18194_A5793
Alternate gene names: 78067262
Gene position: 2906964-2908637 (Clockwise)
Preceding gene: 78067259
Following gene: 78067263
Centisome position: 78.69
GC content: 67.26
Gene sequence:
>1674_bases ATGGCTTACAACCGTCGCTCGAAGCACATCACGCAAGGTGTGGCCCGCTCGCCGAACCGCTCGATGTATTACGCACTCGG CTACCAGAAGGACGATTTCGACAAGCCGATGGTCGGCATCGCGAACGGCCATTCGACGATCACGCCGTGCAATTCCGGCC TGCAGCGCCTGTCGGACGCGGCCGTCGCGGCCGTGAAGGCGGCCGATGCGAACCCGCAGATCTTCGGCACGCCGACGATT TCGGACGGCATGTCGATGGGCACCGAAGGCATGAAGTACTCGCTCGTGTCGCGCGAGGTGATCGCCGACTGCATCGAAAC CTGCGTGCAGGGGCAATGGATGGACGGCGTGGTCGTCGTTGGCGGCTGCGACAAGAACATGCCGGGCGGGATGATCGCGC TCGCACGCCTGAACGTGCCGGGCATCTACGTGTACGGCGGCACGATCCGCCCCGGCAACTGGAAAGGCCGGGACCTGACG ATCGTGTCGTCGTTCGAGGCCGTCGGCGAATTCACGGCGGGCCGGATGTCGCAGGAGGATTTCGAAGGCGTCGAGCGGAA CGCATGCCCGACGTCGGGCTCCTGCGGCGGGATGTACACCGCGAACACGATGAGCTCGTCGTTCGAGGCGCTCGGGATGT CGCTGCTGTACTCGTCGACGATGGCGAACCCCGACCAGGAGAAGGTCGATTCGGCCGCCGAATCGGCACGCGTGCTCGTC GAGGCCGTGAAGCGCGACCTGAAGCCGCGCGACATCATCACGAAGGAGTCGATCGAGAACGCGGTGTCGGTGATCATGGC GACGGGCGGCTCGACCAATGCGGTGCTGCACTACCTCGCGATCGCGCACGCGGCCGAGGTCGACTGGACGATCGAGGACT TCGAGCGCATCCGCAAGCGCGTGCCCGTGATCTGCGACCTGAAGCCGTCGGGGAAGTACGTCGCCACCGACCTGCACCGG GCCGGCGGGATCCCGCAGGTGTTGAAGATCCTGCTCGACGCGGGGCTGCTGCACGGCGACTGCATGACGATCACCGGCCG CACGATTGCCGACGAACTGAAGGACGTGCCGAGCGTGCCGCGCGCCGACCAGGACGTGATCTTCCCGATCGACCGCGCGC TGTACAAGGAAGGCCACCTTGCCATCCTGAAAGGCAATCTCGCGGAAGACGGCGCGGTCGCGAAGATCACCGGCCTGAAG AACCCGGTGATCACGGGCCCGGCACGCGTGTTCGACGACGAGCAGAGTGCGATGGATGCGATTCTCGGCGACCGGATCCG CGCAGGCGACATCCTCGTGCTGCGCTACCTCGGCCCGAAGGGCGGCCCCGGCATGCCGGAAATGCTCGCGCCGACGTCCG CGATCATCGGCAAGGGGCTCGGCGAATCGGTCGGCTTCATCACCGACGGCCGCTTCTCGGGCGGGACCTGGGGGATGGTG GTCGGCCACGTCGCGCCCGAGGCGTTCGTCGGCGGCACGATCGCGCTCGTGCAGGAAGGCGACTCGATCACGATCGACGC GCACCGGCTGCTGCTGCAGCTGAACGTCGACGATGCGGAACTCGCGCGCCGCCGCGCCGCATGGCAACAGCCGGCGCCAC GCTACACCCGCGGCGTGCTCGCGAAATTCGCCGCGCTCGCCCGCCCGGCGAACCAGGGCGCCGTCACGGGTTGA
Upstream 100 bases:
>100_bases AAATAATATATTGGACATCCCAATCCGGAAACTCCATTCTTGATTGATCCGAACCTGCACGCCGTTCACCGGCGTTGCCC AGACAACGATGGAGTCCCCC
Downstream 100 bases:
>100_bases TACGCGCCCGTCAAAAAATGCGACCCCAATAAACATGGCCGCCGGGGGAACGCGCAAAACGCGCTTTCCCTTTGCTTTTA TAATGCGCGGACCATGTAGC
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD 2
Number of amino acids: Translated: 557; Mature: 556
Protein sequence:
>557_residues MAYNRRSKHITQGVARSPNRSMYYALGYQKDDFDKPMVGIANGHSTITPCNSGLQRLSDAAVAAVKAADANPQIFGTPTI SDGMSMGTEGMKYSLVSREVIADCIETCVQGQWMDGVVVVGGCDKNMPGGMIALARLNVPGIYVYGGTIRPGNWKGRDLT IVSSFEAVGEFTAGRMSQEDFEGVERNACPTSGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV EAVKRDLKPRDIITKESIENAVSVIMATGGSTNAVLHYLAIAHAAEVDWTIEDFERIRKRVPVICDLKPSGKYVATDLHR AGGIPQVLKILLDAGLLHGDCMTITGRTIADELKDVPSVPRADQDVIFPIDRALYKEGHLAILKGNLAEDGAVAKITGLK NPVITGPARVFDDEQSAMDAILGDRIRAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV VGHVAPEAFVGGTIALVQEGDSITIDAHRLLLQLNVDDAELARRRAAWQQPAPRYTRGVLAKFAALARPANQGAVTG
Sequences:
>Translated_557_residues MAYNRRSKHITQGVARSPNRSMYYALGYQKDDFDKPMVGIANGHSTITPCNSGLQRLSDAAVAAVKAADANPQIFGTPTI SDGMSMGTEGMKYSLVSREVIADCIETCVQGQWMDGVVVVGGCDKNMPGGMIALARLNVPGIYVYGGTIRPGNWKGRDLT IVSSFEAVGEFTAGRMSQEDFEGVERNACPTSGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV EAVKRDLKPRDIITKESIENAVSVIMATGGSTNAVLHYLAIAHAAEVDWTIEDFERIRKRVPVICDLKPSGKYVATDLHR AGGIPQVLKILLDAGLLHGDCMTITGRTIADELKDVPSVPRADQDVIFPIDRALYKEGHLAILKGNLAEDGAVAKITGLK NPVITGPARVFDDEQSAMDAILGDRIRAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV VGHVAPEAFVGGTIALVQEGDSITIDAHRLLLQLNVDDAELARRRAAWQQPAPRYTRGVLAKFAALARPANQGAVTG >Mature_556_residues AYNRRSKHITQGVARSPNRSMYYALGYQKDDFDKPMVGIANGHSTITPCNSGLQRLSDAAVAAVKAADANPQIFGTPTIS DGMSMGTEGMKYSLVSREVIADCIETCVQGQWMDGVVVVGGCDKNMPGGMIALARLNVPGIYVYGGTIRPGNWKGRDLTI VSSFEAVGEFTAGRMSQEDFEGVERNACPTSGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLVE AVKRDLKPRDIITKESIENAVSVIMATGGSTNAVLHYLAIAHAAEVDWTIEDFERIRKRVPVICDLKPSGKYVATDLHRA GGIPQVLKILLDAGLLHGDCMTITGRTIADELKDVPSVPRADQDVIFPIDRALYKEGHLAILKGNLAEDGAVAKITGLKN PVITGPARVFDDEQSAMDAILGDRIRAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMVV GHVAPEAFVGGTIALVQEGDSITIDAHRLLLQLNVDDAELARRRAAWQQPAPRYTRGVLAKFAALARPANQGAVTG
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family
Homologues:
Organism=Escherichia coli, GI48994964, Length=604, Percent_Identity=37.9139072847682, Blast_Score=376, Evalue=1e-105, Organism=Escherichia coli, GI2367371, Length=579, Percent_Identity=31.6062176165803, Blast_Score=201, Evalue=1e-52, Organism=Escherichia coli, GI1786464, Length=468, Percent_Identity=35.4700854700855, Blast_Score=201, Evalue=1e-52, Organism=Escherichia coli, GI1788157, Length=483, Percent_Identity=30.4347826086957, Blast_Score=185, Evalue=5e-48, Organism=Saccharomyces cerevisiae, GI6322476, Length=560, Percent_Identity=45, Blast_Score=498, Evalue=1e-141,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): ILVD2_BURS3 (Q39DS9)
Other databases:
- EMBL: CP000151 - RefSeq: YP_370031.1 - ProteinModelPortal: Q39DS9 - SMR: Q39DS9 - STRING: Q39DS9 - GeneID: 3751023 - GenomeReviews: CP000151_GR - KEGG: bur:Bcep18194_A5793 - NMPDR: fig|269483.3.peg.6977 - eggNOG: COG0129 - HOGENOM: HBG671001 - OMA: NMPGAMI - ProtClustDB: PRK00911 - BioCyc: BSP36773:BCEP18194_A5793-MONOMER - HAMAP: MF_00012 - InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 - PANTHER: PTHR21000 - TIGRFAMs: TIGR00110
Pfam domain/function: PF00920 ILVD_EDD; SSF52016 Aconitase/3IPM_dehydase_swvl
EC number: =4.2.1.9
Molecular weight: Translated: 59243; Mature: 59112
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: PS00886 ILVD_EDD_1; PS00887 ILVD_EDD_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYNRRSKHITQGVARSPNRSMYYALGYQKDDFDKPMVGIANGHSTITPCNSGLQRLSDA CCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCCEECCHHHHHHHHHHH AVAAVKAADANPQIFGTPTISDGMSMGTEGMKYSLVSREVIADCIETCVQGQWMDGVVVV HHHHHEECCCCCEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEE GGCDKNMPGGMIALARLNVPGIYVYGGTIRPGNWKGRDLTIVSSFEAVGEFTAGRMSQED ECCCCCCCCCEEEEEEECCCEEEEECCEECCCCCCCCEEEEEECHHHHHHHHHCCCCHHH FEGVERNACPTSGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV HHCHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH EAVKRDLKPRDIITKESIENAVSVIMATGGSTNAVLHYLAIAHAAEVDWTIEDFERIRKR HHHHHCCCCHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH VPVICDLKPSGKYVATDLHRAGGIPQVLKILLDAGLLHGDCMTITGRTIADELKDVPSVP CCEEEECCCCCCEEEEHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCC RADQDVIFPIDRALYKEGHLAILKGNLAEDGAVAKITGLKNPVITGPARVFDDEQSAMDA CCCCCEEEEHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCEECCHHHCCCHHHHHHH ILGDRIRAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV HHCCCCCCCCEEEEEEECCCCCCCCCHHHCCHHHHHHCCCCCCCCEEECCCCCCCCHHEE VGHVAPEAFVGGTIALVQEGDSITIDAHRLLLQLNVDDAELARRRAAWQQPAPRYTRGVL EECCCCHHHCCCEEEEEECCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHH AKFAALARPANQGAVTG HHHHHHHCCCCCCCCCC >Mature Secondary Structure AYNRRSKHITQGVARSPNRSMYYALGYQKDDFDKPMVGIANGHSTITPCNSGLQRLSDA CCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCCEECCHHHHHHHHHHH AVAAVKAADANPQIFGTPTISDGMSMGTEGMKYSLVSREVIADCIETCVQGQWMDGVVVV HHHHHEECCCCCEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEE GGCDKNMPGGMIALARLNVPGIYVYGGTIRPGNWKGRDLTIVSSFEAVGEFTAGRMSQED ECCCCCCCCCEEEEEEECCCEEEEECCEECCCCCCCCEEEEEECHHHHHHHHHCCCCHHH FEGVERNACPTSGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV HHCHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH EAVKRDLKPRDIITKESIENAVSVIMATGGSTNAVLHYLAIAHAAEVDWTIEDFERIRKR HHHHHCCCCHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH VPVICDLKPSGKYVATDLHRAGGIPQVLKILLDAGLLHGDCMTITGRTIADELKDVPSVP CCEEEECCCCCCEEEEHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCC RADQDVIFPIDRALYKEGHLAILKGNLAEDGAVAKITGLKNPVITGPARVFDDEQSAMDA CCCCCEEEEHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCEECCHHHCCCHHHHHHH ILGDRIRAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV HHCCCCCCCCEEEEEEECCCCCCCCCHHHCCHHHHHHCCCCCCCCEEECCCCCCCCHHEE VGHVAPEAFVGGTIALVQEGDSITIDAHRLLLQLNVDDAELARRRAAWQQPAPRYTRGVL EECCCCHHHCCCEEEEEECCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHH AKFAALARPANQGAVTG HHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA