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The map label for this gene is ycdC [C]

Identifier: 78067136

GI number: 78067136

Start: 2774978

End: 2775610

Strand: Reverse

Name: ycdC [C]

Synonym: Bcep18194_A5667

Alternate gene names: 78067136

Gene position: 2775610-2774978 (Counterclockwise)

Preceding gene: 78067139

Following gene: 78067133

Centisome position: 75.14

GC content: 63.51

Gene sequence:

>633_bases
ATGAATCAGCCAAAAATCAAAAGAGATCCTGAAGGTACGCGCCGCCGCATCCTGATGGCGGCAGCCGAAGAGTTCGCGAG
TGGAGGGCTGTTCGGCGCACGCGTCGACCAGATCGCGCGCCGGGCCGAAACCAACGAGCGCATGCTCTATTACTACTTCG
GCAGCAAGGAGCAGTTGTTCACGGCCGTGCTCGAACACGCGTTCTCCGCGTTGACCGAGGCCGAGCGCGAGCTCGATCTC
GACGGCGTCGCGCCGGTCGAAGCCGTCACGCGGCTCGCGCATTTCGTTTGGGACTACTACCGCGACCATCCGGAACTGCT
CAGGCTCATCAACAACGAGAACCTGCACGAAGCACGCTACCTGCACAAGTCGACGCGGATCCGCGAGATGATGTCGCCGA
TCGTCGCGAAGCTCGGCAACGTGCTGACGCGCGGCCAGAAGGCCGGGCTGTTCCGCACCGACGTCGATCCGCTGCGCTTC
TACGTGACACTGTCGGGGCTCGGCTACTACATCGTGTCGAACCGCTTCACGCTCGCCGCGACGCTCGGCCGTGACTTCAC
CGACTCCGACGAGCGCGCGGAGATGGTCCGGATGAACACCGAAGTGCTGCTCGCGTATCTGCTGCGGCGCTGA

Upstream 100 bases:

>100_bases
GGAGGGCGGCCGCCCGCGGCGCGCCCGTTCCAGGGCGGCCGGCGCCAAGGCGGTGGGGGTGCCGGTCCGGATCAAGCGGC
TCACATAGCAAAACGCCACC

Downstream 100 bases:

>100_bases
TGCGTTGATGCGCCGACCGCGCCGAAGCGGCCGCCAGATGTAAAAACGCCGCCGTGCGCAGGCAACGGCGGCGTTTTTTC
GTCGGAACGCGGTGCGTCAG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; TetR-Family Transcriptional Regulatory Protein; HTH-Type Transcriptional Regulator; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcriptional Regulator Protein TetR Family; TetR Family Protein Regulatory Protein; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; Transcriptional Regulator TetR; Regulatory Protein; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MNQPKIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLFTAVLEHAFSALTEAERELDL
DGVAPVEAVTRLAHFVWDYYRDHPELLRLINNENLHEARYLHKSTRIREMMSPIVAKLGNVLTRGQKAGLFRTDVDPLRF
YVTLSGLGYYIVSNRFTLAATLGRDFTDSDERAEMVRMNTEVLLAYLLRR

Sequences:

>Translated_210_residues
MNQPKIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLFTAVLEHAFSALTEAERELDL
DGVAPVEAVTRLAHFVWDYYRDHPELLRLINNENLHEARYLHKSTRIREMMSPIVAKLGNVLTRGQKAGLFRTDVDPLRF
YVTLSGLGYYIVSNRFTLAATLGRDFTDSDERAEMVRMNTEVLLAYLLRR
>Mature_210_residues
MNQPKIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLFTAVLEHAFSALTEAERELDL
DGVAPVEAVTRLAHFVWDYYRDHPELLRLINNENLHEARYLHKSTRIREMMSPIVAKLGNVLTRGQKAGLFRTDVDPLRF
YVTLSGLGYYIVSNRFTLAATLGRDFTDSDERAEMVRMNTEVLLAYLLRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24239; Mature: 24239

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPKIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLF
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH
TAVLEHAFSALTEAERELDLDGVAPVEAVTRLAHFVWDYYRDHPELLRLINNENLHEARY
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHH
LHKSTRIREMMSPIVAKLGNVLTRGQKAGLFRTDVDPLRFYVTLSGLGYYIVSNRFTLAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEEECCCEEEEECCCEEEEE
TLGRDFTDSDERAEMVRMNTEVLLAYLLRR
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNQPKIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLF
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH
TAVLEHAFSALTEAERELDLDGVAPVEAVTRLAHFVWDYYRDHPELLRLINNENLHEARY
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHH
LHKSTRIREMMSPIVAKLGNVLTRGQKAGLFRTDVDPLRFYVTLSGLGYYIVSNRFTLAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEEECCCEEEEECCCEEEEE
TLGRDFTDSDERAEMVRMNTEVLLAYLLRR
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA