Click here to switch to the map view.

The map label for this gene is ykgB [H]

Identifier: 78067133

GI number: 78067133

Start: 2769953

End: 2771197

Strand: Reverse

Name: ykgB [H]

Synonym: Bcep18194_A5664

Alternate gene names: 78067133

Gene position: 2771197-2769953 (Counterclockwise)

Preceding gene: 78067136

Following gene: 78067130

Centisome position: 75.02

GC content: 66.59

Gene sequence:

>1245_bases
ATGCCCAACCGTTTACGCGAGCGTGACGCACGCGCTTCGACACGAGGGTTCCCGCTTAGGCTCGCTCACTGGATGAAAGG
TTTCGCGATCGTGCTCTCCCTTTCCGCGACCCACGCATTTGCGCAGCAATCGACCGCCCCGGCCGACGGCGTCTACAACC
TGCTCGTCGGCACCTATACGGGGGGCGGCAGCGACGGCATCTATGTTTACCGCTTCGATACGAAAACCGGCAGCGTTGCG
CCCGTGTCGTCGGCGAAGACCGTGAATCCGTCGTACCTGTTGCCGAGCCGCGACGGTCGCACCGTCTACGCGGTCAACGA
ACTGCCCGGCGACGACGGGCCGGCAACGACGCGCGGCGGCGTCAGCGCATTCCGCTTCGACGCGAAGACGGGCGCGCTGA
GTTTCATCGACCGCGTGTCGTCGGAAGGGAACGATCCTTGCTATCTCGCGCTGTCGCCGGACGGCAAGTACCTCGTGACC
GCCAATTACTCGGTCGCGAAGGATCCGGGCGGCAGCTTCGCGGTGTTTCCGCTGCGCGACGACGGCGCGGTCGGCCAGGC
CGCGCTGACCGTGCACCATGAAGGCACGGGGCCCGTGAAGGGGCGCCAGGACGGCGCGCACGTGCATTCGACAGTGTTTT
CGCCCGACGGCCGTTACCTGTTCGTGCAGGATCTCGGCGCGGACAAGATCTACGGCTACCGCTACACGGTGGACGGCAGC
CGCGGGCTGATCAGCCCGACCGAGACGCGCTACACGCCGGTGAAGGCGGGCTCGGGCCCGCGTCACATGGTGTTCAGTGC
CGACGGCCGGTACGCGTACGTGACGAGCGAGCTCAACGCGTCGGTCGAGGTGTTCGGCTACCACGACGGCAAGCTGACGC
CGGTCGAGACCGTATCGATGACCGCGCCGGGCTTCAAGGGCAAGGTCGGCGGCGGCGCGATCCACCTGTCGCCGGACGGC
CGCTTCCTGTACGTGAGCAACCGCGGTGACGCGAACGACCTGGTGATCTACGCGGTGAACCAGGGCGACGGCCGGTTGAA
GCAGGTCGGCCGCCAGTCGAGCCTCGGCAAGACGCCGCGCGAGTTCCTGATCGATCCGACCGGCAAGTGGCTGATCGTCG
GCAACCAGGACAGCGATACGTTCTACGTGTTCAGCCGCAATGCCGAAACGGGGCAGCTCGGCCCGAATCCGCAGAAGGTG
GCGGTCGGCAAGCCGGTCGACTTCAAGCTGGTGCCGGTGCAGTAA

Upstream 100 bases:

>100_bases
GCGCCGCGCCCCGTATACTCGGCCGGGCGGCGGAGCGCATGAACGGCCGGCGTTTCGTCCTATCTCAACACTTGAAGCGA
CTCGACGCAAGGAGGATTCA

Downstream 100 bases:

>100_bases
ATGAAAAAGGGCGCTGCCGATGCAGCGCCCTTTGTTTTTCGGGGCCGCCGGTTTCCCGGTGCGCCCGTGTCGGTTGCCGG
CGGCCGACCGGCCGCCGCGC

Product: 3-carboxymuconate cyclase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MPNRLRERDARASTRGFPLRLAHWMKGFAIVLSLSATHAFAQQSTAPADGVYNLLVGTYTGGGSDGIYVYRFDTKTGSVA
PVSSAKTVNPSYLLPSRDGRTVYAVNELPGDDGPATTRGGVSAFRFDAKTGALSFIDRVSSEGNDPCYLALSPDGKYLVT
ANYSVAKDPGGSFAVFPLRDDGAVGQAALTVHHEGTGPVKGRQDGAHVHSTVFSPDGRYLFVQDLGADKIYGYRYTVDGS
RGLISPTETRYTPVKAGSGPRHMVFSADGRYAYVTSELNASVEVFGYHDGKLTPVETVSMTAPGFKGKVGGGAIHLSPDG
RFLYVSNRGDANDLVIYAVNQGDGRLKQVGRQSSLGKTPREFLIDPTGKWLIVGNQDSDTFYVFSRNAETGQLGPNPQKV
AVGKPVDFKLVPVQ

Sequences:

>Translated_414_residues
MPNRLRERDARASTRGFPLRLAHWMKGFAIVLSLSATHAFAQQSTAPADGVYNLLVGTYTGGGSDGIYVYRFDTKTGSVA
PVSSAKTVNPSYLLPSRDGRTVYAVNELPGDDGPATTRGGVSAFRFDAKTGALSFIDRVSSEGNDPCYLALSPDGKYLVT
ANYSVAKDPGGSFAVFPLRDDGAVGQAALTVHHEGTGPVKGRQDGAHVHSTVFSPDGRYLFVQDLGADKIYGYRYTVDGS
RGLISPTETRYTPVKAGSGPRHMVFSADGRYAYVTSELNASVEVFGYHDGKLTPVETVSMTAPGFKGKVGGGAIHLSPDG
RFLYVSNRGDANDLVIYAVNQGDGRLKQVGRQSSLGKTPREFLIDPTGKWLIVGNQDSDTFYVFSRNAETGQLGPNPQKV
AVGKPVDFKLVPVQ
>Mature_413_residues
PNRLRERDARASTRGFPLRLAHWMKGFAIVLSLSATHAFAQQSTAPADGVYNLLVGTYTGGGSDGIYVYRFDTKTGSVAP
VSSAKTVNPSYLLPSRDGRTVYAVNELPGDDGPATTRGGVSAFRFDAKTGALSFIDRVSSEGNDPCYLALSPDGKYLVTA
NYSVAKDPGGSFAVFPLRDDGAVGQAALTVHHEGTGPVKGRQDGAHVHSTVFSPDGRYLFVQDLGADKIYGYRYTVDGSR
GLISPTETRYTPVKAGSGPRHMVFSADGRYAYVTSELNASVEVFGYHDGKLTPVETVSMTAPGFKGKVGGGAIHLSPDGR
FLYVSNRGDANDLVIYAVNQGDGRLKQVGRQSSLGKTPREFLIDPTGKWLIVGNQDSDTFYVFSRNAETGQLGPNPQKVA
VGKPVDFKLVPVQ

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786983, Length=275, Percent_Identity=32, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943 [H]

Pfam domain/function: PF10282 DUF2394 [H]

EC number: NA

Molecular weight: Translated: 44249; Mature: 44118

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNRLRERDARASTRGFPLRLAHWMKGFAIVLSLSATHAFAQQSTAPADGVYNLLVGTYT
CCCHHHHHHCCCCCCCCCCHHHHHHCCEEEEEEECHHHHHHHCCCCCCCCEEEEEEEEEC
GGGSDGIYVYRFDTKTGSVAPVSSAKTVNPSYLLPSRDGRTVYAVNELPGDDGPATTRGG
CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCC
VSAFRFDAKTGALSFIDRVSSEGNDPCYLALSPDGKYLVTANYSVAKDPGGSFAVFPLRD
CEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCEEECCCCCCEEEEEECC
DGAVGQAALTVHHEGTGPVKGRQDGAHVHSTVFSPDGRYLFVQDLGADKIYGYRYTVDGS
CCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEEEEECCC
RGLISPTETRYTPVKAGSGPRHMVFSADGRYAYVTSELNASVEVFGYHDGKLTPVETVSM
CCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEE
TAPGFKGKVGGGAIHLSPDGRFLYVSNRGDANDLVIYAVNQGDGRLKQVGRQSSLGKTPR
ECCCCCCCCCCCEEEECCCCCEEEEECCCCCCCEEEEEEECCCCHHHHHCCCCCCCCCCH
EFLIDPTGKWLIVGNQDSDTFYVFSRNAETGQLGPNPQKVAVGKPVDFKLVPVQ
HEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEECC
>Mature Secondary Structure 
PNRLRERDARASTRGFPLRLAHWMKGFAIVLSLSATHAFAQQSTAPADGVYNLLVGTYT
CCHHHHHHCCCCCCCCCCHHHHHHCCEEEEEEECHHHHHHHCCCCCCCCEEEEEEEEEC
GGGSDGIYVYRFDTKTGSVAPVSSAKTVNPSYLLPSRDGRTVYAVNELPGDDGPATTRGG
CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCC
VSAFRFDAKTGALSFIDRVSSEGNDPCYLALSPDGKYLVTANYSVAKDPGGSFAVFPLRD
CEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCEEECCCCCCEEEEEECC
DGAVGQAALTVHHEGTGPVKGRQDGAHVHSTVFSPDGRYLFVQDLGADKIYGYRYTVDGS
CCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEEEEECCC
RGLISPTETRYTPVKAGSGPRHMVFSADGRYAYVTSELNASVEVFGYHDGKLTPVETVSM
CCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEE
TAPGFKGKVGGGAIHLSPDGRFLYVSNRGDANDLVIYAVNQGDGRLKQVGRQSSLGKTPR
ECCCCCCCCCCCEEEECCCCCEEEEECCCCCCCEEEEEEECCCCHHHHHCCCCCCCCCCH
EFLIDPTGKWLIVGNQDSDTFYVFSRNAETGQLGPNPQKVAVGKPVDFKLVPVQ
HEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]