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The map label for this gene is ydhO [H]

Identifier: 78066836

GI number: 78066836

Start: 2429092

End: 2429766

Strand: Reverse

Name: ydhO [H]

Synonym: Bcep18194_A5367

Alternate gene names: 78066836

Gene position: 2429766-2429092 (Counterclockwise)

Preceding gene: 78066837

Following gene: 78066834

Centisome position: 65.77

GC content: 65.04

Gene sequence:

>675_bases
ATGCAGCATCGATCCCTGACCCAGGCATGCGCGCGCACCATCGCCGGGCTGTTCATCGGCGCCCTGTTTGCAGCAGCTCC
CGGCGCGTTCGCCGACGAAGTCAGCAGTTTTAACCAAAATGTCACGAATTCGACGCAGAACGCGTCGAATTCCTCCCTCC
AGCAGACCAGCGCGCAGCCGTCGAGCGGCGGCGCGAAGTCGTTCCTCGCGGGCATGGCCGGCAAGGCAGGCGACGTGGTC
GTCGGCGCGCTGAACATGATCGGCGTGCGCTATCGCTGGGGCGGCAACTCGCCGGATTCGGGCCTCGACTGCAGCGGCTT
CGTGCGCTACGTGTTCCAGGACACGCTCGGCATGTCGCTGCCGCGCCGTGCGGAAGAGATGAGCCGCGTCGGCGAGAAGG
TGAGCATGAGCAACCTGAAGCCGGGCGACCTCGTGTTCTTCAACACGATGCGCCGTACGTTCTCGCACGTCGGCATCTAC
ATCGGCGACAACAAGTTCGTGCACTCGCCGTCGACGGGCAGCACCATCCGCGTCGACGATCTCGACAGCGGCTACTGGGA
AAAGCGTTTCACCGGCGCGCGCCGGCTGGAATCGGAGTTCCCGATGAAGCCGGAAGACCTGCGTCAGCGCGTGCGCGCGA
CGATCGGCGACGATTCGGCGAACGGCAACAACTGA

Upstream 100 bases:

>100_bases
TTGTATTTATTAATTTGTTTTGACAAACGATTACGCGCTGGCTAGTATCGACCGAAATTTTCCGCCAATCAGCTGATTTT
TAAGCAAATTCCATCGACCA

Downstream 100 bases:

>100_bases
CGTTCGACGGCCAGTCCGGCCGGATCGAAAAAACCCTGTCACCGAAAGGCGGCAGGGTTTTTTGTTTTGGGGCGGTGCAA
ACGGGGAGTTGACCGTTGCT

Product: NLP/P60 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MQHRSLTQACARTIAGLFIGALFAAAPGAFADEVSSFNQNVTNSTQNASNSSLQQTSAQPSSGGAKSFLAGMAGKAGDVV
VGALNMIGVRYRWGGNSPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVSMSNLKPGDLVFFNTMRRTFSHVGIY
IGDNKFVHSPSTGSTIRVDDLDSGYWEKRFTGARRLESEFPMKPEDLRQRVRATIGDDSANGNN

Sequences:

>Translated_224_residues
MQHRSLTQACARTIAGLFIGALFAAAPGAFADEVSSFNQNVTNSTQNASNSSLQQTSAQPSSGGAKSFLAGMAGKAGDVV
VGALNMIGVRYRWGGNSPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVSMSNLKPGDLVFFNTMRRTFSHVGIY
IGDNKFVHSPSTGSTIRVDDLDSGYWEKRFTGARRLESEFPMKPEDLRQRVRATIGDDSANGNN
>Mature_224_residues
MQHRSLTQACARTIAGLFIGALFAAAPGAFADEVSSFNQNVTNSTQNASNSSLQQTSAQPSSGGAKSFLAGMAGKAGDVV
VGALNMIGVRYRWGGNSPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVSMSNLKPGDLVFFNTMRRTFSHVGIY
IGDNKFVHSPSTGSTIRVDDLDSGYWEKRFTGARRLESEFPMKPEDLRQRVRATIGDDSANGNN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=138, Percent_Identity=44.9275362318841, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1786421, Length=126, Percent_Identity=42.0634920634921, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788501, Length=111, Percent_Identity=49.5495495495495, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=40, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 24163; Mature: 24163

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHRSLTQACARTIAGLFIGALFAAAPGAFADEVSSFNQNVTNSTQNASNSSLQQTSAQP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCC
SSGGAKSFLAGMAGKAGDVVVGALNMIGVRYRWGGNSPDSGLDCSGFVRYVFQDTLGMSL
CCCCHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
PRRAEEMSRVGEKVSMSNLKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGSTIRVDD
CHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCEEECCCEEEECCCCCCEEEEEC
LDSGYWEKRFTGARRLESEFPMKPEDLRQRVRATIGDDSANGNN
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MQHRSLTQACARTIAGLFIGALFAAAPGAFADEVSSFNQNVTNSTQNASNSSLQQTSAQP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCC
SSGGAKSFLAGMAGKAGDVVVGALNMIGVRYRWGGNSPDSGLDCSGFVRYVFQDTLGMSL
CCCCHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
PRRAEEMSRVGEKVSMSNLKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGSTIRVDD
CHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCEEECCCEEEECCCCCCEEEEEC
LDSGYWEKRFTGARRLESEFPMKPEDLRQRVRATIGDDSANGNN
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]