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The map label for this gene is skp [H]

Identifier: 78066789

GI number: 78066789

Start: 2371634

End: 2372131

Strand: Reverse

Name: skp [H]

Synonym: Bcep18194_A5320

Alternate gene names: 78066789

Gene position: 2372131-2371634 (Counterclockwise)

Preceding gene: 78066790

Following gene: 78066788

Centisome position: 64.21

GC content: 65.26

Gene sequence:

>498_bases
ATGTGCGCGCTGACCGTTGCGCTGGCCTTGGGCGCGGCAACGGTGCACGCACAGGACGTCGCCCGCATCGCGGCGGTCAA
TTCGGATCGGATCCTGCGCGAGTCGGTGCCCGCGAAGGCGGCGCAGACGAAGCTCGAAGCCGAGTTCGCGAAGCGTGACA
AGGATCTGCAGGATCTGGCGGCGCGCCTGAAGTCGATGTCCGATTCGCTGGACAAGAACGGCGCGTCGCTGTCGGCGGCC
GACCGCGCGCAGAAGCAACGCGATCTCGCCCAGCTCGATACCGACTTCCAGCGCAAGCAGCGCGAGTTCCGCGAAGACCT
GAACCAGCGCCGCAACGAGGAACTGGCGGCCGTGCTCGAACGTGCGAACAAGGTCATCAAGCAGATCGCCGAGCAGCAGA
ATTACGACCTGATCGTGCAGGAAGCCGTGTACGTCAGCCCGCGCATCGACATCACCGACAAGGTGCTCAAGGCGCTCGCG
TCCGGCTCGACGAACTGA

Upstream 100 bases:

>100_bases
CAGAAATTCCAGTTCCAGATCGGGACGGCGTTCTGACCGAACGCATGACAACAGCAACGAGAGGGTAATTTTGCTAACCG
GTAAGTTTTCGAAACGAGTG

Downstream 100 bases:

>100_bases
ACGGAGCAGACGACGAATGGCATTGACGCTTGAGGAACTCGTAAAGCGGTTCGGCGGCGAGATCGCCGGCGACGCACAGT
GCAAGGTGGGCGGGCTCGCA

Product: outer membrane chaperone Skp (OmpH)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MCALTVALALGAATVHAQDVARIAAVNSDRILRESVPAKAAQTKLEAEFAKRDKDLQDLAARLKSMSDSLDKNGASLSAA
DRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLERANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALA
SGSTN

Sequences:

>Translated_165_residues
MCALTVALALGAATVHAQDVARIAAVNSDRILRESVPAKAAQTKLEAEFAKRDKDLQDLAARLKSMSDSLDKNGASLSAA
DRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLERANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALA
SGSTN
>Mature_165_residues
MCALTVALALGAATVHAQDVARIAAVNSDRILRESVPAKAAQTKLEAEFAKRDKDLQDLAARLKSMSDSLDKNGASLSAA
DRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLERANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALA
SGSTN

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

None

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 18248; Mature: 18248

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCALTVALALGAATVHAQDVARIAAVNSDRILRESVPAKAAQTKLEAEFAKRDKDLQDLA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
ARLKSMSDSLDKNGASLSAADRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALASGSTN
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MCALTVALALGAATVHAQDVARIAAVNSDRILRESVPAKAAQTKLEAEFAKRDKDLQDLA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
ARLKSMSDSLDKNGASLSAADRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALASGSTN
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA