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The map label for this gene is ycjC [C]

Identifier: 78066472

GI number: 78066472

Start: 2041044

End: 2041619

Strand: Reverse

Name: ycjC [C]

Synonym: Bcep18194_A5003

Alternate gene names: 78066472

Gene position: 2041619-2041044 (Counterclockwise)

Preceding gene: 78066473

Following gene: 78066471

Centisome position: 55.27

GC content: 64.93

Gene sequence:

>576_bases
ATGGTTTTGCCCCCTGATGAGTCGGTGCTCGTCGCCATGTCGCTAGGCAACAAGATCCGGGCGCTGCGCCAGCGCCTGAA
ACTCACGCTCGACGAAACGTCGACGATCGCCGGCATTTCGAAGCCGTTCCTGTCGCAGGTCGAGCGCGGGCGGGCGACGC
CGTCGATCACGTCGCTGGTGCGGATCGCGAAGGCGCTGGGCGTGACGATGCAGTACTTCATCGACACGCCGACGGAAGCG
CGCTCGGTATGCCGTGGCAACGCGCTGCAGTATTTCCAGTTCACGAACTCGGCCAGCCGGTTCGCGAGGCTGACGAACCT
GGTGGACGGCCGCAAGCTCGATGCGATTCTTGTCCGGATGCCGGCCGGGCAGCTGTCGTCCGAGATGACGACGCATGCGG
GCGAGGAGTTCGTCTACGTGTTGCGCGGGCAGGTGGCGCTGACGCTCGAGGATTGCACGTTCACGCTGAACGAGGGCGAT
ACCGCGCATTACGAATCGACGATGCCGCATGCGTGGCGCAACACGGCCGACGAAGAGGCGGTGATCGTCTGGGTCGGCAC
GCCCCGGCTGTTCTAG

Upstream 100 bases:

>100_bases
ACAGCGTGCAGCGGGGGATCGCGCCGGGCCGGGTGTGTCACGGCACCGGTCGAGGCTTGACGACATCAAACCGATTTCGA
CTGCGAGGGTCCGTCTTTCC

Downstream 100 bases:

>100_bases
CGAAGGCGGTCGGCAGGAGGGGGAAGTACCCGATCGACGGCAGACGGTGCGCAGTACGGCGCGCGCACGGGCTCGCCATA
TGCAAAACACGCTGTCGGTC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; MerR Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Transcriptional Regulator Cro/CI Family; Transcriptional Regulator Protein; Cupin Domain Protein; Transcription Regulator; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator Xre Familiy; Helix-Turn-Helix Transcriptional Regulator PuuR; HTH-Type Transcriptional Regulator; Transcriptional Regulator Cro/CI Family Protein; Helix-Turn-Helix Protein; Transcriptional Regulator Xre Family; XRE Family-Like Protein; Transcriptional Regulatory Protein; Epoxidase; Transcriptional Regulator XRE Family Protein; Hth-Type Transcriptional Regulator; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MVLPPDESVLVAMSLGNKIRALRQRLKLTLDETSTIAGISKPFLSQVERGRATPSITSLVRIAKALGVTMQYFIDTPTEA
RSVCRGNALQYFQFTNSASRFARLTNLVDGRKLDAILVRMPAGQLSSEMTTHAGEEFVYVLRGQVALTLEDCTFTLNEGD
TAHYESTMPHAWRNTADEEAVIVWVGTPRLF

Sequences:

>Translated_191_residues
MVLPPDESVLVAMSLGNKIRALRQRLKLTLDETSTIAGISKPFLSQVERGRATPSITSLVRIAKALGVTMQYFIDTPTEA
RSVCRGNALQYFQFTNSASRFARLTNLVDGRKLDAILVRMPAGQLSSEMTTHAGEEFVYVLRGQVALTLEDCTFTLNEGD
TAHYESTMPHAWRNTADEEAVIVWVGTPRLF
>Mature_191_residues
MVLPPDESVLVAMSLGNKIRALRQRLKLTLDETSTIAGISKPFLSQVERGRATPSITSLVRIAKALGVTMQYFIDTPTEA
RSVCRGNALQYFQFTNSASRFARLTNLVDGRKLDAILVRMPAGQLSSEMTTHAGEEFVYVLRGQVALTLEDCTFTLNEGD
TAHYESTMPHAWRNTADEEAVIVWVGTPRLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787557, Length=183, Percent_Identity=22.9508196721311, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21167; Mature: 21167

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLPPDESVLVAMSLGNKIRALRQRLKLTLDETSTIAGISKPFLSQVERGRATPSITSLV
CCCCCCCCEEEEECCCHHHHHHHHHHCEECCCCHHHHHCCHHHHHHHHHCCCCHHHHHHH
RIAKALGVTMQYFIDTPTEARSVCRGNALQYFQFTNSASRFARLTNLVDGRKLDAILVRM
HHHHHHCCHHEEEECCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
PAGQLSSEMTTHAGEEFVYVLRGQVALTLEDCTFTLNEGDTAHYESTMPHAWRNTADEEA
CCCHHHHHHHHHCCCCEEEEEECCEEEEEECEEEEECCCCCCCCCCCCCHHHCCCCCCCE
VIVWVGTPRLF
EEEEECCCCCC
>Mature Secondary Structure
MVLPPDESVLVAMSLGNKIRALRQRLKLTLDETSTIAGISKPFLSQVERGRATPSITSLV
CCCCCCCCEEEEECCCHHHHHHHHHHCEECCCCHHHHHCCHHHHHHHHHCCCCHHHHHHH
RIAKALGVTMQYFIDTPTEARSVCRGNALQYFQFTNSASRFARLTNLVDGRKLDAILVRM
HHHHHHCCHHEEEECCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
PAGQLSSEMTTHAGEEFVYVLRGQVALTLEDCTFTLNEGDTAHYESTMPHAWRNTADEEA
CCCHHHHHHHHHCCCCEEEEEECCEEEEEECEEEEECCCCCCCCCCCCCHHHCCCCCCCE
VIVWVGTPRLF
EEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA