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The map label for this gene is yeaM [H]

Identifier: 78066357

GI number: 78066357

Start: 1902020

End: 1902856

Strand: Reverse

Name: yeaM [H]

Synonym: Bcep18194_A4887

Alternate gene names: 78066357

Gene position: 1902856-1902020 (Counterclockwise)

Preceding gene: 78066361

Following gene: 78066355

Centisome position: 51.51

GC content: 70.13

Gene sequence:

>837_bases
ATGCCCATCCGAGACGTTTCTCCACCCCGCACCGCGAAGCGCGCCGACTCCGATCCGAGCGAGCGTGAGGACGGCCCGTC
GCTGATCGCCGTCTGGGGCGAAGACGACGGCAGCAACACTTACCGGCTCGGTACCCGCGAGGTCGACTGGCACAGCCATC
TGCGCGGGCAGGTGTTCTGCGTGGAAAGCGGTTTCGCGCACGTGCGCACGCCGCATGGTTCGTGGCTGCTGCCGCCGCAT
CGCGCGGGCTGGATTCCGCCGGGCGAGCAGCACAAGGTCAGCATCAGCGGTGCGTTGAGCGGCTGGAGCGTCGTGATCGC
ACCGGCCGCGAGCCGGCGAATGCCGGACCAGCCTTGCGTGATTGCGATTACCGAGCTGATGCGCGCGCTCGTGCGGCGCG
CGGTGTCGTGGGCCGACCAGGACCGGCTCGACATCGAGCAGGCGCGCATCAGCATCGTGCTGCTGGACGAGATGCGCCGC
GCGCCGCACGAGCCGCTGCACCTGCCGATGCCGCGCGACCGGCGCCTGCTGCGCATCGCCAACGCAATCCTCGGGCAGCC
GCACGACAGCCGCACGCTCGAGGCGTGGGCCGAATGGGCCGGGTTGTCCGCCCGCACGCTGAGCCGGCTGTTCGTCGCGG
AAACCGGCACGAGCTTCGCGCAATGGCGCCAGCAGGCGCGCCTGACGCATGCGCTCGAACGGCTCGCGAGCGGCGACAGC
GTCGCGAACATCGCGGACGCGCTGGGCTATGCGACGCCAAGCAACTTCATCGCGATGTTCCGCCGCGCATTCGGCGACTC
GCCCGCGCATTACTTCGCGAAGCGCAAGCAGCCGTAG

Upstream 100 bases:

>100_bases
ATTCCTCTGCTTCGTATCGGTTTGAACACGACACGCATTGTTGGATGCCCCCGGACAAAGCTGATAATGTTGTTTAGTCA
AAAAATAATGAATTCCGGCC

Downstream 100 bases:

>100_bases
CGCAGTGCGCGCGCGACGGCCGATGTGTTGACGGTGCTGCTGGCGCGGATCAATGCGCCGGATTGAGGACGCGCATGGCG
CGTGTTCCCTTCCCTGCCGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MPIRDVSPPRTAKRADSDPSEREDGPSLIAVWGEDDGSNTYRLGTREVDWHSHLRGQVFCVESGFAHVRTPHGSWLLPPH
RAGWIPPGEQHKVSISGALSGWSVVIAPAASRRMPDQPCVIAITELMRALVRRAVSWADQDRLDIEQARISIVLLDEMRR
APHEPLHLPMPRDRRLLRIANAILGQPHDSRTLEAWAEWAGLSARTLSRLFVAETGTSFAQWRQQARLTHALERLASGDS
VANIADALGYATPSNFIAMFRRAFGDSPAHYFAKRKQP

Sequences:

>Translated_278_residues
MPIRDVSPPRTAKRADSDPSEREDGPSLIAVWGEDDGSNTYRLGTREVDWHSHLRGQVFCVESGFAHVRTPHGSWLLPPH
RAGWIPPGEQHKVSISGALSGWSVVIAPAASRRMPDQPCVIAITELMRALVRRAVSWADQDRLDIEQARISIVLLDEMRR
APHEPLHLPMPRDRRLLRIANAILGQPHDSRTLEAWAEWAGLSARTLSRLFVAETGTSFAQWRQQARLTHALERLASGDS
VANIADALGYATPSNFIAMFRRAFGDSPAHYFAKRKQP
>Mature_277_residues
PIRDVSPPRTAKRADSDPSEREDGPSLIAVWGEDDGSNTYRLGTREVDWHSHLRGQVFCVESGFAHVRTPHGSWLLPPHR
AGWIPPGEQHKVSISGALSGWSVVIAPAASRRMPDQPCVIAITELMRALVRRAVSWADQDRLDIEQARISIVLLDEMRRA
PHEPLHLPMPRDRRLLRIANAILGQPHDSRTLEAWAEWAGLSARTLSRLFVAETGTSFAQWRQQARLTHALERLASGDSV
ANIADALGYATPSNFIAMFRRAFGDSPAHYFAKRKQP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=224, Percent_Identity=33.0357142857143, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31048; Mature: 30916

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIRDVSPPRTAKRADSDPSEREDGPSLIAVWGEDDGSNTYRLGTREVDWHSHLRGQVFC
CCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCEECCHHHCCCCEEEE
VESGFAHVRTPHGSWLLPPHRAGWIPPGEQHKVSISGALSGWSVVIAPAASRRMPDQPCV
EECCCCEEECCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCHHCCCCCCCHH
IAITELMRALVRRAVSWADQDRLDIEQARISIVLLDEMRRAPHEPLHLPMPRDRRLLRIA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEHHHHHCCCCCCCCCCCCCCHHHHHHH
NAILGQPHDSRTLEAWAEWAGLSARTLSRLFVAETGTSFAQWRQQARLTHALERLASGDS
HHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
VANIADALGYATPSNFIAMFRRAFGDSPAHYFAKRKQP
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure 
PIRDVSPPRTAKRADSDPSEREDGPSLIAVWGEDDGSNTYRLGTREVDWHSHLRGQVFC
CCCCCCCCCHHHCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCEECCHHHCCCCEEEE
VESGFAHVRTPHGSWLLPPHRAGWIPPGEQHKVSISGALSGWSVVIAPAASRRMPDQPCV
EECCCCEEECCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCHHCCCCCCCHH
IAITELMRALVRRAVSWADQDRLDIEQARISIVLLDEMRRAPHEPLHLPMPRDRRLLRIA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEHHHHHCCCCCCCCCCCCCCHHHHHHH
NAILGQPHDSRTLEAWAEWAGLSARTLSRLFVAETGTSFAQWRQQARLTHALERLASGDS
HHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
VANIADALGYATPSNFIAMFRRAFGDSPAHYFAKRKQP
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]