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The map label for this gene is alkS [H]

Identifier: 78066308

GI number: 78066308

Start: 1853911

End: 1856613

Strand: Reverse

Name: alkS [H]

Synonym: Bcep18194_A4838

Alternate gene names: 78066308

Gene position: 1856613-1853911 (Counterclockwise)

Preceding gene: 78066309

Following gene: 78066307

Centisome position: 50.26

GC content: 73.58

Gene sequence:

>2703_bases
ATGGCCCACCCACCCGATCGCGCCGACGCGCCTCCCACCGAACTGGTCCTGAAGACGACCGCACCGCGCGTGCCGGCGCA
GTTGCTGGCCCGCGCGCGGCTGAGCCTCGCCGCGCCCGCTTTCGACGGCCGGCCGGTCACGCTCGTGCAGGCGCCGGCCG
GTTACGGCAAGACGTCGCTGCTCGCGCAATGGCGCCGCGAAACCCTTGCGCTCGGCCGTGCGGTCGTGTGGCTGTCGGCC
GACGAGCGCGACGATGCGGCGCGGTTGCTGCAGGGGCTCGTGCAGGCGGTGCGGACCGGCTGCGCGCGGCCCGGCTTCGG
GCGCCTGATCCCGGTCGGCGCGGCCGACGCGGCGCGTGCGCTGGAAGGCGTGACCGCATGGCTGGCCGAGGTCGCGCAAC
TGTCGATCGATGCGCTGCTGATCGTCGACGATGCGGAGCGGCTGCCGCCCGCCGGCCTCGACGCGCTGACCTACGTGCTG
CACAACGCACCGCAAAACCTGCATGTCGTCGTCGCCGCGCGGCGCGGGCTCGACCACGTGGCCGGCGATCTGCTCGCCGG
CGGGCAATGCACGCTCGCCGGCCCCGACGAGCTGCGCTTCACGCTCGACGAGACGATCGCGCTGGTCGGCGCGCGCTTTG
CGCAGAAAGTCGACGCCGACGCGTGCGCGCGGCTGTTCGAGCGCGTCGACGGCTGGCCGCTCGGCCTGCAGCTCGCGATG
GCCGCGATGGCGCGTTCGGCCGACCCGCGCCAGGCGGTCGACGCGCTCGCCGCCCGCGTGGACGGCACGCGCGACCGGCT
CGTCGAGCTGCTGCTCACGAACCTGTCGGCCGACGACACCGCATTCCTGACCCGCACGAGCGTTGCCGATCGCCTGCATC
CGTCGCTGTGCGCCGCGCTGCTCGACGACGCCGACGCGCCCGACCGCCTCGCGCGGCTCGCACGCGACACGCCGCTGTTC
ATTGCGTCGGACGATTCGGACTGGTGCCGGCTGCATCCGCTCGTGCGCGACACGCTGCGCGACCGTCTGGCCGCGGGCCC
GGAAGCCGAACGCAGCGCGCTGCATGCGCGTGCGGCCGCCTGGCTCGACGCGCACGGGATGACCGAGGAAGCCGCCCGCC
ACGCGTATGCGGCCGGCCAGTTCGAGGTGGCGTACGCGCTCGCGCAGCGCTGCCTCGAGGATGCGATCAAGCAGGGCCGC
ATCAACGACGTGCTGGACTGGCTCGCGCTGCTGCCCGATGCGGAGCTCGACAAGCGTCCGACGCTACGCGTCGCGGTGGC
GTGGGCGCTGGCGCTCGGCGAGCGCCATGTCGAGGCGCAGCGCCAGATCGCGGGCATCCTCGCGGATCCCGGCACGCCCG
CGGCGATGCGCTACGAATGCGCGCTGATCCTCAGCGCGGCCGCGTATTACGCCGACGAAATCGACCGCTTCGTCGAGCTG
TTCGAACCGTGGGCCGACTTCACGCCGCCGGCGGCGACGTGGCTCGCGCAAATGCACGCGAACCGGCTGTCGGCGCGCGC
GATCATCGTCGGCGAACCGGCGCAAGCGCGCCGTTTTCAGCACGCGGCGCCGCGCGGCGAGACGGCGGCCGGGTTCGGCT
ATGTCGCGCGCTGGGGCGAGCTGATCACGGGCCTGAGCTACCTGCGCGAGGGCCAGGTCCGGCTGGCCGACGACGCGCTG
TCGCCGGCGCTCGCGCGTGCGGAAGCCGATCTCGGGCGCCGCCATCCGCTCACCTGCATGCTCGCGGCGATGTGCGCGGC
GCTCGCGTACGAGGCCGACCGCGTCGACCAGGCGGCCGCGTTGCTCGCAAACCGGCTCGACGTACTCGAACATGCGGGCA
CGCCCGATACCGTGCTGCTCGGCTATCGCACCGCCGCGCGCATCGCGCTGCTGCGCGGCGTCGAGCACCGTGCGATCGAC
CTGCTCGAAGCGCTCGACGCGATGGGCGTCGCGCGGCGCCTGCCGCGCCTGTCGGTCGCGAGTCTCGCCGAACAGGTGCG
CATACATGCGGCACGCTATCGCGAGGCGACCTGCCACGCGCTCGTCGAGCGGATCGATGCGATCGCCGCAGCCGAGTTTC
CGTCGCACGGGCCGCTGTGGCGGCGGCCCGTCGTGCTACTGCAGGCAACCGCGCACGCCGGCGCGGCGCTGGCCGCGCGC
CGCTGGGATGACGCAAGCGCCGCGCTTGACGAAGCCGCGGTGCTGGCCCGCGAAATGAGCATGGGGCAGGCACGCATCGA
GATCATGGCGCTCAGCGCGTTCGCACTCGAACAGTCAGGCGGCGGTGGCCGCGCGCGGCTCGACGAGGCGATGAACCTCG
CCGACCTGTTCGGGCTGATGCGCACGCTTGCCGACGCGCATCCGGCCATCGCCGACTGGGCGCGCCGCGCCGGCGACGAG
GCAGCCGCCGGTACCGGCCCCGCGCGGCACGCGCTGCCGCAGCCACGCATCGTGCCGCCCGCCCCGCGCGCCGCGGCCAG
CCCGCGCGCGGTGCCGAGCGTCGTGCTGACGCCGAAGGAGCGCGCGATTCTCGAATTGCTCGCGCGCAACCTGTCGAACA
AGGAGATCGCGGTGGCGCTCGCCGTCGGCGAGGAAACCGTGAAGTGGCACCTGAAGAACCTGTTCGGCAAGCTCGACGCC
AGCTCGCGCAAGCATGCGGTGCGCCGTGCGCTGGTGCTCGGCCTGCTCGAAAGCGCGCCCTGA

Upstream 100 bases:

>100_bases
GGGGGGATTGACGCGCGAACGCGGTTCGACCGATCCTTCCCCCCACACCCACCCCGGACGATGGCCCGCACGGCACCGCC
GGATTCCGACTGCTGCCCCG

Downstream 100 bases:

>100_bases
CGCTGTAACGCCGGCTCCGCCATTCGGGCGTATTGCCGCGCCCGCCTCCCTCCGATTCTCCGCAACCCTGCCCCCCGTGC
GTGGGGGGGAGCGGCCGCCC

Product: ATP-dependent transcription regulator LuxR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 900; Mature: 899

Protein sequence:

>900_residues
MAHPPDRADAPPTELVLKTTAPRVPAQLLARARLSLAAPAFDGRPVTLVQAPAGYGKTSLLAQWRRETLALGRAVVWLSA
DERDDAARLLQGLVQAVRTGCARPGFGRLIPVGAADAARALEGVTAWLAEVAQLSIDALLIVDDAERLPPAGLDALTYVL
HNAPQNLHVVVAARRGLDHVAGDLLAGGQCTLAGPDELRFTLDETIALVGARFAQKVDADACARLFERVDGWPLGLQLAM
AAMARSADPRQAVDALAARVDGTRDRLVELLLTNLSADDTAFLTRTSVADRLHPSLCAALLDDADAPDRLARLARDTPLF
IASDDSDWCRLHPLVRDTLRDRLAAGPEAERSALHARAAAWLDAHGMTEEAARHAYAAGQFEVAYALAQRCLEDAIKQGR
INDVLDWLALLPDAELDKRPTLRVAVAWALALGERHVEAQRQIAGILADPGTPAAMRYECALILSAAAYYADEIDRFVEL
FEPWADFTPPAATWLAQMHANRLSARAIIVGEPAQARRFQHAAPRGETAAGFGYVARWGELITGLSYLREGQVRLADDAL
SPALARAEADLGRRHPLTCMLAAMCAALAYEADRVDQAAALLANRLDVLEHAGTPDTVLLGYRTAARIALLRGVEHRAID
LLEALDAMGVARRLPRLSVASLAEQVRIHAARYREATCHALVERIDAIAAAEFPSHGPLWRRPVVLLQATAHAGAALAAR
RWDDASAALDEAAVLAREMSMGQARIEIMALSAFALEQSGGGGRARLDEAMNLADLFGLMRTLADAHPAIADWARRAGDE
AAAGTGPARHALPQPRIVPPAPRAAASPRAVPSVVLTPKERAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDA
SSRKHAVRRALVLGLLESAP

Sequences:

>Translated_900_residues
MAHPPDRADAPPTELVLKTTAPRVPAQLLARARLSLAAPAFDGRPVTLVQAPAGYGKTSLLAQWRRETLALGRAVVWLSA
DERDDAARLLQGLVQAVRTGCARPGFGRLIPVGAADAARALEGVTAWLAEVAQLSIDALLIVDDAERLPPAGLDALTYVL
HNAPQNLHVVVAARRGLDHVAGDLLAGGQCTLAGPDELRFTLDETIALVGARFAQKVDADACARLFERVDGWPLGLQLAM
AAMARSADPRQAVDALAARVDGTRDRLVELLLTNLSADDTAFLTRTSVADRLHPSLCAALLDDADAPDRLARLARDTPLF
IASDDSDWCRLHPLVRDTLRDRLAAGPEAERSALHARAAAWLDAHGMTEEAARHAYAAGQFEVAYALAQRCLEDAIKQGR
INDVLDWLALLPDAELDKRPTLRVAVAWALALGERHVEAQRQIAGILADPGTPAAMRYECALILSAAAYYADEIDRFVEL
FEPWADFTPPAATWLAQMHANRLSARAIIVGEPAQARRFQHAAPRGETAAGFGYVARWGELITGLSYLREGQVRLADDAL
SPALARAEADLGRRHPLTCMLAAMCAALAYEADRVDQAAALLANRLDVLEHAGTPDTVLLGYRTAARIALLRGVEHRAID
LLEALDAMGVARRLPRLSVASLAEQVRIHAARYREATCHALVERIDAIAAAEFPSHGPLWRRPVVLLQATAHAGAALAAR
RWDDASAALDEAAVLAREMSMGQARIEIMALSAFALEQSGGGGRARLDEAMNLADLFGLMRTLADAHPAIADWARRAGDE
AAAGTGPARHALPQPRIVPPAPRAAASPRAVPSVVLTPKERAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDA
SSRKHAVRRALVLGLLESAP
>Mature_899_residues
AHPPDRADAPPTELVLKTTAPRVPAQLLARARLSLAAPAFDGRPVTLVQAPAGYGKTSLLAQWRRETLALGRAVVWLSAD
ERDDAARLLQGLVQAVRTGCARPGFGRLIPVGAADAARALEGVTAWLAEVAQLSIDALLIVDDAERLPPAGLDALTYVLH
NAPQNLHVVVAARRGLDHVAGDLLAGGQCTLAGPDELRFTLDETIALVGARFAQKVDADACARLFERVDGWPLGLQLAMA
AMARSADPRQAVDALAARVDGTRDRLVELLLTNLSADDTAFLTRTSVADRLHPSLCAALLDDADAPDRLARLARDTPLFI
ASDDSDWCRLHPLVRDTLRDRLAAGPEAERSALHARAAAWLDAHGMTEEAARHAYAAGQFEVAYALAQRCLEDAIKQGRI
NDVLDWLALLPDAELDKRPTLRVAVAWALALGERHVEAQRQIAGILADPGTPAAMRYECALILSAAAYYADEIDRFVELF
EPWADFTPPAATWLAQMHANRLSARAIIVGEPAQARRFQHAAPRGETAAGFGYVARWGELITGLSYLREGQVRLADDALS
PALARAEADLGRRHPLTCMLAAMCAALAYEADRVDQAAALLANRLDVLEHAGTPDTVLLGYRTAARIALLRGVEHRAIDL
LEALDAMGVARRLPRLSVASLAEQVRIHAARYREATCHALVERIDAIAAAEFPSHGPLWRRPVVLLQATAHAGAALAARR
WDDASAALDEAAVLAREMSMGQARIEIMALSAFALEQSGGGGRARLDEAMNLADLFGLMRTLADAHPAIADWARRAGDEA
AAGTGPARHALPQPRIVPPAPRAAASPRAVPSVVLTPKERAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDAS
SRKHAVRRALVLGLLESAP

Specific function: May act as a transcriptional regulator of AlkB [H]

COG id: COG2909

COG function: function code K; ATP-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI2367223, Length=366, Percent_Identity=26.5027322404372, Blast_Score=102, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 96489; Mature: 96358

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHPPDRADAPPTELVLKTTAPRVPAQLLARARLSLAAPAFDGRPVTLVQAPAGYGKTSL
CCCCCCCCCCCHHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHH
LAQWRRETLALGRAVVWLSADERDDAARLLQGLVQAVRTGCARPGFGRLIPVGAADAARA
HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHH
LEGVTAWLAEVAQLSIDALLIVDDAERLPPAGLDALTYVLHNAPQNLHVVVAARRGLDHV
HHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCHHHHHHHHHCCCCCEEEEEEEHHCHHHH
AGDLLAGGQCTLAGPDELRFTLDETIALVGARFAQKVDADACARLFERVDGWPLGLQLAM
HHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHH
AAMARSADPRQAVDALAARVDGTRDRLVELLLTNLSADDTAFLTRTSVADRLHPSLCAAL
HHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LDDADAPDRLARLARDTPLFIASDDSDWCRLHPLVRDTLRDRLAAGPEAERSALHARAAA
HCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
WLDAHGMTEEAARHAYAAGQFEVAYALAQRCLEDAIKQGRINDVLDWLALLPDAELDKRP
HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC
TLRVAVAWALALGERHVEAQRQIAGILADPGTPAAMRYECALILSAAAYYADEIDRFVEL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEPWADFTPPAATWLAQMHANRLSARAIIVGEPAQARRFQHAAPRGETAAGFGYVARWGE
HHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
LITGLSYLREGQVRLADDALSPALARAEADLGRRHPLTCMLAAMCAALAYEADRVDQAAA
HHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLANRLDVLEHAGTPDTVLLGYRTAARIALLRGVEHRAIDLLEALDAMGVARRLPRLSVA
HHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHH
SLAEQVRIHAARYREATCHALVERIDAIAAAEFPSHGPLWRRPVVLLQATAHAGAALAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCHHHHHH
RWDDASAALDEAAVLAREMSMGQARIEIMALSAFALEQSGGGGRARLDEAMNLADLFGLM
CCCCHHHHHHHHHHHHHHHHCCHHHHHEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RTLADAHPAIADWARRAGDEAAAGTGPARHALPQPRIVPPAPRAAASPRAVPSVVLTPKE
HHHHHCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHH
RAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGLLESAP
HHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AHPPDRADAPPTELVLKTTAPRVPAQLLARARLSLAAPAFDGRPVTLVQAPAGYGKTSL
CCCCCCCCCCHHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHH
LAQWRRETLALGRAVVWLSADERDDAARLLQGLVQAVRTGCARPGFGRLIPVGAADAARA
HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHH
LEGVTAWLAEVAQLSIDALLIVDDAERLPPAGLDALTYVLHNAPQNLHVVVAARRGLDHV
HHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCHHHHHHHHHCCCCCEEEEEEEHHCHHHH
AGDLLAGGQCTLAGPDELRFTLDETIALVGARFAQKVDADACARLFERVDGWPLGLQLAM
HHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHH
AAMARSADPRQAVDALAARVDGTRDRLVELLLTNLSADDTAFLTRTSVADRLHPSLCAAL
HHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LDDADAPDRLARLARDTPLFIASDDSDWCRLHPLVRDTLRDRLAAGPEAERSALHARAAA
HCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
WLDAHGMTEEAARHAYAAGQFEVAYALAQRCLEDAIKQGRINDVLDWLALLPDAELDKRP
HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC
TLRVAVAWALALGERHVEAQRQIAGILADPGTPAAMRYECALILSAAAYYADEIDRFVEL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEPWADFTPPAATWLAQMHANRLSARAIIVGEPAQARRFQHAAPRGETAAGFGYVARWGE
HHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
LITGLSYLREGQVRLADDALSPALARAEADLGRRHPLTCMLAAMCAALAYEADRVDQAAA
HHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLANRLDVLEHAGTPDTVLLGYRTAARIALLRGVEHRAIDLLEALDAMGVARRLPRLSVA
HHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHH
SLAEQVRIHAARYREATCHALVERIDAIAAAEFPSHGPLWRRPVVLLQATAHAGAALAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCHHHHHH
RWDDASAALDEAAVLAREMSMGQARIEIMALSAFALEQSGGGGRARLDEAMNLADLFGLM
CCCCHHHHHHHHHHHHHHHHCCHHHHHEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RTLADAHPAIADWARRAGDEAAAGTGPARHALPQPRIVPPAPRAAASPRAVPSVVLTPKE
HHHHHCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHH
RAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGLLESAP
HHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11207749; 11390693 [H]