Click here to switch to the map view.

The map label for this gene is ydhJ [H]

Identifier: 78066062

GI number: 78066062

Start: 1572200

End: 1573075

Strand: Reverse

Name: ydhJ [H]

Synonym: Bcep18194_A4591

Alternate gene names: 78066062

Gene position: 1573075-1572200 (Counterclockwise)

Preceding gene: 78066063

Following gene: 78066059

Centisome position: 42.58

GC content: 65.87

Gene sequence:

>876_bases
ATGATTCTCAGAAAACTCTTCGGCTTCGTCGCGACCGCCGTCATTCTTCTCGTCGCGATCCTGATCGGGCGCTCGCTGTG
GGTGCACTACATGGATGATCCGTGGACGCGCGACGGGCGCGTGCGCGCCGAGATCGTCAACGTCGCGCCGGACGTGTCGG
GCGCGATCGTCGAGCTGCCCGTGCATGACAACCAGCTCGTCAAGAAAGGCGACCTGATCATGCAGATCGACCCGTCGCAT
TACCAGATCGCAGTCGAGCAGGCGCAGGCGGCCGTCGCCGCCCGCCGCGCGGAACTGCAGATGCGCCGCGACGACGCGGC
CCGCCGCGCGGATCTCGATGCGCTCGTCGTGTCAAAGGAAAACCGCGAGAACGCCGCGCATAGCGCGTCGAGCGCCGATG
CACAGTACCAGCAGGCGATCGCCGCGCTCGATGCCGCGAAGCTCAACCTCGAGCGCACGCGCGTCGTCGCGCCGGTCGAC
GGCTACATCACGAACCTGCAGACGTTCAAGGGCAACTATGCGGTGGCCGGCCAGGCGAAGCTCGCGATCGTCGACAGCCA
TTCGTTCTGGGTCTACGGCTACTTCGAGGAAACCAAGCTGCCGCGCGTGAAGATCGGCGCGCCGGCCGAGATGCGGCTGA
TGAGCGGTGGCGTGATGAAGGGCCACGTCGAAAGCATCTCGCGCGGCATCTACGATCGCGACAACCCGCAGAGCCGCGAC
CTCGTCGCGGACGTGAACCCGACGTTCAACTGGGTGCGCCTCGCGCAGCGCGTGCCGGTGCGCATCAAGATCGACGACGT
GCCGGCCGACGTGGTGCTGTCGGCGGGCACGACCTGCACGGTCATCATCGATCCGGACAAGCAGAAGAAGTCGTAA

Upstream 100 bases:

>100_bases
CTACCGTCTCGTCTGGCACCCGTCGTTGTTCCGGGCCTGCCTTCTCGTCTGCATTTGCGGCGGACTGAGTCTTGCCGTTT
ACCGTTGATTCCGAACCATC

Downstream 100 bases:

>100_bases
GCGCGGGACGCGCCGGGCGGCCCCCCGCCCGGCTGCATCATTCCCAGAAGAACCGGTAAGGCAGGAACGGCGACGGGCCG
AGCCCCGATTCGCCCAGCAT

Product: HlyD family secretion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MILRKLFGFVATAVILLVAILIGRSLWVHYMDDPWTRDGRVRAEIVNVAPDVSGAIVELPVHDNQLVKKGDLIMQIDPSH
YQIAVEQAQAAVAARRAELQMRRDDAARRADLDALVVSKENRENAAHSASSADAQYQQAIAALDAAKLNLERTRVVAPVD
GYITNLQTFKGNYAVAGQAKLAIVDSHSFWVYGYFEETKLPRVKIGAPAEMRLMSGGVMKGHVESISRGIYDRDNPQSRD
LVADVNPTFNWVRLAQRVPVRIKIDDVPADVVLSAGTTCTVIIDPDKQKKS

Sequences:

>Translated_291_residues
MILRKLFGFVATAVILLVAILIGRSLWVHYMDDPWTRDGRVRAEIVNVAPDVSGAIVELPVHDNQLVKKGDLIMQIDPSH
YQIAVEQAQAAVAARRAELQMRRDDAARRADLDALVVSKENRENAAHSASSADAQYQQAIAALDAAKLNLERTRVVAPVD
GYITNLQTFKGNYAVAGQAKLAIVDSHSFWVYGYFEETKLPRVKIGAPAEMRLMSGGVMKGHVESISRGIYDRDNPQSRD
LVADVNPTFNWVRLAQRVPVRIKIDDVPADVVLSAGTTCTVIIDPDKQKKS
>Mature_291_residues
MILRKLFGFVATAVILLVAILIGRSLWVHYMDDPWTRDGRVRAEIVNVAPDVSGAIVELPVHDNQLVKKGDLIMQIDPSH
YQIAVEQAQAAVAARRAELQMRRDDAARRADLDALVVSKENRENAAHSASSADAQYQQAIAALDAAKLNLERTRVVAPVD
GYITNLQTFKGNYAVAGQAKLAIVDSHSFWVYGYFEETKLPRVKIGAPAEMRLMSGGVMKGHVESISRGIYDRDNPQSRD
LVADVNPTFNWVRLAQRVPVRIKIDDVPADVVLSAGTTCTVIIDPDKQKKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=280, Percent_Identity=45.7142857142857, Blast_Score=251, Evalue=3e-68,
Organism=Escherichia coli, GI1789637, Length=283, Percent_Identity=40.9893992932862, Blast_Score=214, Evalue=5e-57,
Organism=Escherichia coli, GI1790519, Length=307, Percent_Identity=30.2931596091205, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788711, Length=339, Percent_Identity=26.5486725663717, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789041, Length=300, Percent_Identity=24.3333333333333, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082036, Length=136, Percent_Identity=33.0882352941176, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790012, Length=277, Percent_Identity=24.187725631769, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081796, Length=182, Percent_Identity=29.6703296703297, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 32094; Mature: 32094

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRKLFGFVATAVILLVAILIGRSLWVHYMDDPWTRDGRVRAEIVNVAPDVSGAIVELP
CHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCEEEEE
VHDNQLVKKGDLIMQIDPSHYQIAVEQAQAAVAARRAELQMRRDDAARRADLDALVVSKE
CCCCCCEECCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
NRENAAHSASSADAQYQQAIAALDAAKLNLERTRVVAPVDGYITNLQTFKGNYAVAGQAK
CCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHEEECCCEEEECCEE
LAIVDSHSFWVYGYFEETKLPRVKIGAPAEMRLMSGGVMKGHVESISRGIYDRDNPQSRD
EEEEECCCEEEEEEEECCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCC
LVADVNPTFNWVRLAQRVPVRIKIDDVPADVVLSAGTTCTVIIDPDKQKKS
EEEECCCCHHHHHHHHHCCEEEEECCCCCEEEEECCCEEEEEECCCCCCCC
>Mature Secondary Structure
MILRKLFGFVATAVILLVAILIGRSLWVHYMDDPWTRDGRVRAEIVNVAPDVSGAIVELP
CHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCEEEEE
VHDNQLVKKGDLIMQIDPSHYQIAVEQAQAAVAARRAELQMRRDDAARRADLDALVVSKE
CCCCCCEECCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
NRENAAHSASSADAQYQQAIAALDAAKLNLERTRVVAPVDGYITNLQTFKGNYAVAGQAK
CCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHEEECCCEEEECCEE
LAIVDSHSFWVYGYFEETKLPRVKIGAPAEMRLMSGGVMKGHVESISRGIYDRDNPQSRD
EEEEECCCEEEEEEEECCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCC
LVADVNPTFNWVRLAQRVPVRIKIDDVPADVVLSAGTTCTVIIDPDKQKKS
EEEECCCCHHHHHHHHHCCEEEEECCCCCEEEEECCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]