Click here to switch to the map view.

The map label for this gene is ydhP [H]

Identifier: 78065869

GI number: 78065869

Start: 1358077

End: 1359282

Strand: Reverse

Name: ydhP [H]

Synonym: Bcep18194_A4398

Alternate gene names: 78065869

Gene position: 1359282-1358077 (Counterclockwise)

Preceding gene: 78065870

Following gene: 78065868

Centisome position: 36.8

GC content: 71.06

Gene sequence:

>1206_bases
GTGAACACCACGACTTCCTCTCCTTCCCGCCCGGGCGGCAGCGCAGCGCTGCCGCTGCTGGCACTCGCCGCCGGTGCGTT
CGGCATCGGCACGACCGAGTTCTCGCCGATGGGCCTGCTGCCCGTGATCGCCGACGGCGTGCACGTGTCGATTCCGCAGG
CCGGCATGCTGATCAGCGCGTATGCGATCGGCGTGATGGTCGGCGCGCCGCTGATGACGCTGCTGCTCGCACGCTGGTCG
CGCCGCTCGGCGCTGATCGCGCTGATGTCGATCTTCACGATCGGCAACCTGCTGTCGGCGTTCGCGCCGGGCTACACGAC
GCTGCTGCTCGCCCGCCTCGTGACGAGCCTCAACCACGGCGCGTTCTTCGGACTCGGCTCGGTGGTCGCGGCCAGCCTCG
TGCCGCGCGAAAAGCAGGCCAGCGCGGTCGCGACGATGTTCATGGGTCTCACGATCGCGAACGTCGGCGGCGTGCCGGCC
GCGACCTGGCTCGGCCAGATCATCGGCTGGCGCATGTCGTTCGCGGCGACCGCGGGCCTCGGCCTGGTGGCGATCGCCGG
GCTGTTCGCGGCACTGCCGAAGGGCGAAGCCGGCAAGATGCCCGACCTGCGCGCGGAACTCTCGGTGCTGACGCGCCCCG
TCGTGCTCGGCGCGCTCGGGACGACCGTGCTCGGCGCCGGTGCGATGTTCACGCTCTATACGTATGTCGCGCCGACGCTC
GAACACGTGACCGGCGCGACGCCCGGCTTCGTGACCGCGATGCTGGTGCTGATCGGCGTCGGCTTCTCGATCGGCAACAT
CGCGGGCGGGCGCCTCGCCGACCGCTCGCTCGACGGCACGCTGATCGGTTTCCTGCTGTTGCTGATCGCCACGATGGCGG
CGTTCCCGGTGCTCGCCAGCACGCACGTCGGCGCAGCCGTCACGCTGCTCGTGTGGGGTGTCGCAACGTTCGCGGTCGTG
CCGCCGCTGCAGATGCGCGTGATGCGGGCGGCCCACGAAGCGCCGGGCCTCGCGTCGGCCGTCAACATCGGCGCGTTCAA
CCTCGGCAATGCGCTCGGCGCAGCCGCCGGCGGTGCGGCGATCTCGGCAGGCTTCGGTTATGCGGCCGTGCCGCTCGTCG
GCGGGCTGATCGCCGCAGCCGGACTCGCACTCGTGTTCCTGCAGATCGCGCAGCAGCGCCGCGCACCGGCCGCCACGAAT
TCGTAA

Upstream 100 bases:

>100_bases
TTCGTTCGTATACGGCTTTTTCCGCAAAAGTCATGCAGGCACACTTCGCCCTGTCCTCAACGGCCTGTGCCGTTGTCCCT
CGACTACAGGAGCTCATCGC

Downstream 100 bases:

>100_bases
TCGCGACACGTCGCGCCGGTGATGCGCGACGGCCCACCTCCCCTCAGGCAAACACGTTCACGGCCGCGCAAAGCGGCCGT
CTTCGTTTCAATCGGCAATT

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MNTTTSSPSRPGGSAALPLLALAAGAFGIGTTEFSPMGLLPVIADGVHVSIPQAGMLISAYAIGVMVGAPLMTLLLARWS
RRSALIALMSIFTIGNLLSAFAPGYTTLLLARLVTSLNHGAFFGLGSVVAASLVPREKQASAVATMFMGLTIANVGGVPA
ATWLGQIIGWRMSFAATAGLGLVAIAGLFAALPKGEAGKMPDLRAELSVLTRPVVLGALGTTVLGAGAMFTLYTYVAPTL
EHVTGATPGFVTAMLVLIGVGFSIGNIAGGRLADRSLDGTLIGFLLLLIATMAAFPVLASTHVGAAVTLLVWGVATFAVV
PPLQMRVMRAAHEAPGLASAVNIGAFNLGNALGAAAGGAAISAGFGYAAVPLVGGLIAAAGLALVFLQIAQQRRAPAATN
S

Sequences:

>Translated_401_residues
MNTTTSSPSRPGGSAALPLLALAAGAFGIGTTEFSPMGLLPVIADGVHVSIPQAGMLISAYAIGVMVGAPLMTLLLARWS
RRSALIALMSIFTIGNLLSAFAPGYTTLLLARLVTSLNHGAFFGLGSVVAASLVPREKQASAVATMFMGLTIANVGGVPA
ATWLGQIIGWRMSFAATAGLGLVAIAGLFAALPKGEAGKMPDLRAELSVLTRPVVLGALGTTVLGAGAMFTLYTYVAPTL
EHVTGATPGFVTAMLVLIGVGFSIGNIAGGRLADRSLDGTLIGFLLLLIATMAAFPVLASTHVGAAVTLLVWGVATFAVV
PPLQMRVMRAAHEAPGLASAVNIGAFNLGNALGAAAGGAAISAGFGYAAVPLVGGLIAAAGLALVFLQIAQQRRAPAATN
S
>Mature_401_residues
MNTTTSSPSRPGGSAALPLLALAAGAFGIGTTEFSPMGLLPVIADGVHVSIPQAGMLISAYAIGVMVGAPLMTLLLARWS
RRSALIALMSIFTIGNLLSAFAPGYTTLLLARLVTSLNHGAFFGLGSVVAASLVPREKQASAVATMFMGLTIANVGGVPA
ATWLGQIIGWRMSFAATAGLGLVAIAGLFAALPKGEAGKMPDLRAELSVLTRPVVLGALGTTVLGAGAMFTLYTYVAPTL
EHVTGATPGFVTAMLVLIGVGFSIGNIAGGRLADRSLDGTLIGFLLLLIATMAAFPVLASTHVGAAVTLLVWGVATFAVV
PPLQMRVMRAAHEAPGLASAVNIGAFNLGNALGAAAGGAAISAGFGYAAVPLVGGLIAAAGLALVFLQIAQQRRAPAATN
S

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=384, Percent_Identity=72.3958333333333, Blast_Score=508, Evalue=1e-145,
Organism=Escherichia coli, GI1786595, Length=384, Percent_Identity=31.7708333333333, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1787808, Length=397, Percent_Identity=29.7229219143577, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI145693198, Length=365, Percent_Identity=25.7534246575342, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40109; Mature: 40109

Theoretical pI: Translated: 11.07; Mature: 11.07

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTTSSPSRPGGSAALPLLALAAGAFGIGTTEFSPMGLLPVIADGVHVSIPQAGMLISA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEECCCCHHHHHH
YAIGVMVGAPLMTLLLARWSRRSALIALMSIFTIGNLLSAFAPGYTTLLLARLVTSLNHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
AFFGLGSVVAASLVPREKQASAVATMFMGLTIANVGGVPAATWLGQIIGWRMSFAATAGL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
GLVAIAGLFAALPKGEAGKMPDLRAELSVLTRPVVLGALGTTVLGAGAMFTLYTYVAPTL
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHVTGATPGFVTAMLVLIGVGFSIGNIAGGRLADRSLDGTLIGFLLLLIATMAAFPVLAS
HHHCCCCHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
THVGAAVTLLVWGVATFAVVPPLQMRVMRAAHEAPGLASAVNIGAFNLGNALGAAAGGAA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHCCCCHHHCHHHHHHCCCHH
ISAGFGYAAVPLVGGLIAAAGLALVFLQIAQQRRAPAATNS
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]