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The map label for this gene is sdsB [H]

Identifier: 78065859

GI number: 78065859

Start: 1346657

End: 1347583

Strand: Direct

Name: sdsB [H]

Synonym: Bcep18194_A4388

Alternate gene names: 78065859

Gene position: 1346657-1347583 (Clockwise)

Preceding gene: 78065855

Following gene: 78065861

Centisome position: 36.45

GC content: 69.15

Gene sequence:

>927_bases
GTGAACATCCGGAAACTTCGCCATGCGCTTGGCCTCGCCCAGCACCTGACGTTCAGCCGCGCGAGCGTCGACGTCAACCT
CAGCCAGCCCGCGCTGTCCCGCAGCATCCAGTCGATCGAAGCCGAGCTCGGCGTCGCGCTGTTCGACCGCCATCCGAACG
GCGTGTCGCTGACGCCTTACGGCAAGGTATTTGCCGAACGCGCGCGGCGCATCGTGATGGAAGCGACGGAATTGCAGCGC
GACCTCGCGCTGATGCAGCATGGCGAATTCGGCGAGTTGTCGATCGGGCTCGGCGCGACGCCGGCGATCCTGCTGACCGG
GCCGCTGATGGACCATTTCCTGCGCGAGGCGCCGCAGGTGCGCGTGAGCATCAAACGCGGCCGTCGCGATACGCTGCTGC
GACGGCTGCTCGAGGAGCACGTCGACCTGTTCATCGGCGACATCGCGCAACTCGAGGATCACGCCGACCTGCAGCTGACC
CGGTTGCCGCGCTGGCCCAGCGGCTTCTTCTGTACGCCGGACCATCCGCTCGCGCGCCGGGACGCGGTGACGCGCGACGA
ACTGCTGCAGCACCGGCTCGGTTCGATCGAATTGTCGCCGTGGGCGCTGTCCGACCTGTGCGAGTACTTCGAGTGCTCGT
TCGATGCGTCGATCTCGTTCCGCAGCGACGATTTTCGCGACGTGGAGGCGGCGGCGTCGGTGGGCGGGATGGTCGTGTTC
GGCAATGCGGCGGCGTTTCGCGACGCGCTGCGGTGCGGGACGCTGGTCGAGCTGCCGCTCGATCCGCCGTTTCGCCGCGA
AGCGCGGCTGGGGCTCGTGACGCTGGCCGCGCGGACGCTGTCGCCGGCCGCGATGCGCGCGAAGGCGCTGGCCGAATCGG
TCTTCGCGGATTGCGCGGCGACGGCGCTCGGCGCGGCGCCGCGATGA

Upstream 100 bases:

>100_bases
GCAGCGGCATGCGAGGCACGGCCGTTGCGGGGGCTCGCCATCCGCCGCGGCCCGTTCGACGGCAGGTCGACTCATTGCCG
TCATCCGTTCGAGGACCGTC

Downstream 100 bases:

>100_bases
ACGACCGGCCGACGCGCAACCGGCGTCGTCGTGCCTGCTACTTCCCCAACCGCTCCGCCAGCGAGTAGCGCTGCATGCAG
CGCTCCATCGCGTCGAGAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MNIRKLRHALGLAQHLTFSRASVDVNLSQPALSRSIQSIEAELGVALFDRHPNGVSLTPYGKVFAERARRIVMEATELQR
DLALMQHGEFGELSIGLGATPAILLTGPLMDHFLREAPQVRVSIKRGRRDTLLRRLLEEHVDLFIGDIAQLEDHADLQLT
RLPRWPSGFFCTPDHPLARRDAVTRDELLQHRLGSIELSPWALSDLCEYFECSFDASISFRSDDFRDVEAAASVGGMVVF
GNAAAFRDALRCGTLVELPLDPPFRREARLGLVTLAARTLSPAAMRAKALAESVFADCAATALGAAPR

Sequences:

>Translated_308_residues
MNIRKLRHALGLAQHLTFSRASVDVNLSQPALSRSIQSIEAELGVALFDRHPNGVSLTPYGKVFAERARRIVMEATELQR
DLALMQHGEFGELSIGLGATPAILLTGPLMDHFLREAPQVRVSIKRGRRDTLLRRLLEEHVDLFIGDIAQLEDHADLQLT
RLPRWPSGFFCTPDHPLARRDAVTRDELLQHRLGSIELSPWALSDLCEYFECSFDASISFRSDDFRDVEAAASVGGMVVF
GNAAAFRDALRCGTLVELPLDPPFRREARLGLVTLAARTLSPAAMRAKALAESVFADCAATALGAAPR
>Mature_308_residues
MNIRKLRHALGLAQHLTFSRASVDVNLSQPALSRSIQSIEAELGVALFDRHPNGVSLTPYGKVFAERARRIVMEATELQR
DLALMQHGEFGELSIGLGATPAILLTGPLMDHFLREAPQVRVSIKRGRRDTLLRRLLEEHVDLFIGDIAQLEDHADLQLT
RLPRWPSGFFCTPDHPLARRDAVTRDELLQHRLGSIELSPWALSDLCEYFECSFDASISFRSDDFRDVEAAASVGGMVVF
GNAAAFRDALRCGTLVELPLDPPFRREARLGLVTLAARTLSPAAMRAKALAESVFADCAATALGAAPR

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=31.25, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI2367136, Length=121, Percent_Identity=37.1900826446281, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790399, Length=302, Percent_Identity=28.1456953642384, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787879, Length=191, Percent_Identity=30.8900523560209, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=24.3986254295533, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=146, Percent_Identity=30.1369863013699, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787530, Length=195, Percent_Identity=25.6410256410256, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082024, Length=167, Percent_Identity=25.1497005988024, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788297, Length=146, Percent_Identity=26.027397260274, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33930; Mature: 33930

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRKLRHALGLAQHLTFSRASVDVNLSQPALSRSIQSIEAELGVALFDRHPNGVSLTPY
CCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHCHHEEECCCCCCEECCH
GKVFAERARRIVMEATELQRDLALMQHGEFGELSIGLGATPAILLTGPLMDHFLREAPQV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHEEEHHHHHHHHHHCCCE
RVSIKRGRRDTLLRRLLEEHVDLFIGDIAQLEDHADLQLTRLPRWPSGFFCTPDHPLARR
EEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEECCCCCCHHH
DAVTRDELLQHRLGSIELSPWALSDLCEYFECSFDASISFRSDDFRDVEAAASVGGMVVF
HCCCHHHHHHHHHCCEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCEEEE
GNAAAFRDALRCGTLVELPLDPPFRREARLGLVTLAARTLSPAAMRAKALAESVFADCAA
CCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
TALGAAPR
HHHCCCCC
>Mature Secondary Structure
MNIRKLRHALGLAQHLTFSRASVDVNLSQPALSRSIQSIEAELGVALFDRHPNGVSLTPY
CCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHCHHEEECCCCCCEECCH
GKVFAERARRIVMEATELQRDLALMQHGEFGELSIGLGATPAILLTGPLMDHFLREAPQV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHEEEHHHHHHHHHHCCCE
RVSIKRGRRDTLLRRLLEEHVDLFIGDIAQLEDHADLQLTRLPRWPSGFFCTPDHPLARR
EEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEECCCCCCHHH
DAVTRDELLQHRLGSIELSPWALSDLCEYFECSFDASISFRSDDFRDVEAAASVGGMVVF
HCCCHHHHHHHHHCCEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCEEEE
GNAAAFRDALRCGTLVELPLDPPFRREARLGLVTLAARTLSPAAMRAKALAESVFADCAA
CCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
TALGAAPR
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]