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The map label for this gene is glxA [H]

Identifier: 78065762

GI number: 78065762

Start: 1227426

End: 1228469

Strand: Direct

Name: glxA [H]

Synonym: Bcep18194_A4290

Alternate gene names: 78065762

Gene position: 1227426-1228469 (Clockwise)

Preceding gene: 78065761

Following gene: 78065763

Centisome position: 33.23

GC content: 62.55

Gene sequence:

>1044_bases
GTGGTACCGGTGTCTCGTCCCGCAGGCGCCACCCGCACGACGCAGGTGGCAATCGTTGCATTGCCGCCCGTGTCGATGTC
GGGCGTGGGTCCGATCGTCGATGCGCTGAACCTCGCGAACGAGATCGACGGGCGGCTGCTGTATCGCTGGCAGGTGTGTT
CGTGGGACGGGCGGCCCGTGCCGCTCGCCGGCGGCGCGCAGTGGCATGCCGATGCGGCGTTCAACGATGCGATTGCGTGT
GACTGGGTCATCGTCGTGTCGGAGCGGTTTCAGCAGTTTGCCGACTATCGGTTGTTTCTCGCGAGTCTCGCGAGGGTGGG
GCAGCGGACGCCGATCGTCACCGGCATTCACCACGGCGTGTGGTGGCTCGCGATGGCCGGGCAGCTTTCCGGGTATCGCG
TGAGCGTGAACTGGGAGACGTATCAGCAGTTCGCCGAACAGTTCGAGCGGTCGATCGTCACGCAGCAGATTTTCGAGATC
GATCGCGATCGAGCCACCTGTGCCGGTGGGCAGGCTACTGTTGACTTCATGCTGGCCATGATTGGCCGGGAACATGGCCC
GGACCTCGCGGAGAGGATCGCCGATGCGCTTGGCGCCGGGACTTTGCGCAGTGGTGAGGAGCGGCAGCGGATTCCTTTTG
TTACTGCGCCGGGCGAGCGGCATCCTCGGTTGAATGATGCTTTGCTGTTGATGGAAGCCAATGTCGAAGATCCTTTGACG
ACCGATGAGATCGCCGAGCTCGTTGGCGTTTCACGCCGACAACTGGAGCGGCTCTTTCGGCAGTATCTTGGGGCGATGCC
CTCCAAGTATTACCTCAATCTTCGGTTGCTCAAGGCACGGACTCAGTTGCAGCGGACCAGCAAGTCTGTCGTGCAGGTTA
GCCTCGCCTGTGGGTTTTCTTCTGCTGCGCACTTTTCTAATGCGTACCGGGAGAGGTTTGGTGTCACTCCGCGGGAAGAT
CGGAGAGCCTGGCTCGAGAAGCAGACCGGCGGTGGTAGTGAGCCTCGCGGGGGCGCGCTTGTCGAGCGCGGTGCGAAGGA
TTGA

Upstream 100 bases:

>100_bases
GAGGGCGATCCGAAGGAAGTGCTGGTACGCCCGCAGAGCGAGCGGCTGAAGCAGTTCCTGTCGGGCAGTCTCAAGTAACG
CGACAAGGCAGGTTTCAACC

Downstream 100 bases:

>100_bases
ATTTGTTTTGGGTGGTTCGCTTTTGTTTTTCGTGAAGCACCTGTTGTCTTGTCGGTCTATTAGTGTCGCCCCTGCGCGGG
GCGGCGGTTACTTTTCTTTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MVPVSRPAGATRTTQVAIVALPPVSMSGVGPIVDALNLANEIDGRLLYRWQVCSWDGRPVPLAGGAQWHADAAFNDAIAC
DWVIVVSERFQQFADYRLFLASLARVGQRTPIVTGIHHGVWWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEI
DRDRATCAGGQATVDFMLAMIGREHGPDLAERIADALGAGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANVEDPLT
TDEIAELVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFSSAAHFSNAYRERFGVTPRED
RRAWLEKQTGGGSEPRGGALVERGAKD

Sequences:

>Translated_347_residues
MVPVSRPAGATRTTQVAIVALPPVSMSGVGPIVDALNLANEIDGRLLYRWQVCSWDGRPVPLAGGAQWHADAAFNDAIAC
DWVIVVSERFQQFADYRLFLASLARVGQRTPIVTGIHHGVWWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEI
DRDRATCAGGQATVDFMLAMIGREHGPDLAERIADALGAGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANVEDPLT
TDEIAELVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFSSAAHFSNAYRERFGVTPRED
RRAWLEKQTGGGSEPRGGALVERGAKD
>Mature_347_residues
MVPVSRPAGATRTTQVAIVALPPVSMSGVGPIVDALNLANEIDGRLLYRWQVCSWDGRPVPLAGGAQWHADAAFNDAIAC
DWVIVVSERFQQFADYRLFLASLARVGQRTPIVTGIHHGVWWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEI
DRDRATCAGGQATVDFMLAMIGREHGPDLAERIADALGAGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANVEDPLT
TDEIAELVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFSSAAHFSNAYRERFGVTPRED
RRAWLEKQTGGGSEPRGGALVERGAKD

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=100, Percent_Identity=37, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38438; Mature: 38438

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPVSRPAGATRTTQVAIVALPPVSMSGVGPIVDALNLANEIDGRLLYRWQVCSWDGRPV
CCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
PLAGGAQWHADAAFNDAIACDWVIVVSERFQQFADYRLFLASLARVGQRTPIVTGIHHGV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHH
WWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEIDRDRATCAGGQATVDFMLAM
HHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH
IGREHGPDLAERIADALGAGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANVEDPLT
HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCC
TDEIAELVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFS
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHEEHHHHCCC
SAAHFSNAYRERFGVTPREDRRAWLEKQTGGGSEPRGGALVERGAKD
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MVPVSRPAGATRTTQVAIVALPPVSMSGVGPIVDALNLANEIDGRLLYRWQVCSWDGRPV
CCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
PLAGGAQWHADAAFNDAIACDWVIVVSERFQQFADYRLFLASLARVGQRTPIVTGIHHGV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHH
WWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEIDRDRATCAGGQATVDFMLAM
HHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH
IGREHGPDLAERIADALGAGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANVEDPLT
HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCC
TDEIAELVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFS
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHEEHHHHCCC
SAAHFSNAYRERFGVTPREDRRAWLEKQTGGGSEPRGGALVERGAKD
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]