Click here to switch to the map view.

The map label for this gene is recO

Identifier: 78065720

GI number: 78065720

Start: 1182752

End: 1183588

Strand: Direct

Name: recO

Synonym: Bcep18194_A4248

Alternate gene names: 78065720

Gene position: 1182752-1183588 (Clockwise)

Preceding gene: 78065719

Following gene: 78065721

Centisome position: 32.02

GC content: 66.19

Gene sequence:

>837_bases
ATGGGTACGAATGACGCGCTGACGTCGACTGAAGACGCGGTGACGGCCGGCGCGAACGACGCGCCGCTGCCGGCACCGCC
TGAACCGCCGCGCAAGGCGCGGCGCGCGACGTCTCGCACGTCCGATTTCCGTGTCGCCGAGCAGCCGGCGTACGTGCTGC
ACAGTTATCCCTATCGGGAAACGAGCCTGATCATCGACGTGCTGACGCGTGATCATGGTCGACTCGCGCTCGTCGCGAAG
GGCGCGAAGCGCCCGCACTCCGCGCTGCGTGGCGTACTGCAGACCTTCCAGCCGCTGCTGCTGTCCTGGTCGGGCAAATC
CGAGGTGCGCACGCTGACGGGTGCCGAGTGGGTCGGCGGGATGCTGCCGCTCGGTGGCGACGGGCTGCTGTGCGGCTTCT
ACGCGAACGAGCTGCTCGTGAAATTCTGCGCGCGCGAAGATCCCCAGCCGCCGCTCTTCAATCATTACGTGCTGACCCTC
ACGCGCCTCGCGCACGGTGAGCCCGCGGTGCAGGTGCTGCGCTCGTTTGAGCGCGTGCTGCTGCGCGAGACCGGCTACGC
GATGGCGCTGAACCGCACGGTCGCGCGCCGCGCGGTCGAGCCTGATCGTCGCTACGTGTTCGATCCCGAGCGCGGCGTGC
GCAATGCGGACGATGAAGTCCCGTCGCACTGGCCGGTCATTTCCGGACAGACGTTGCTCGATATGGAGCAGGACGATTAC
CATCGAGCCCAGACGGTTGCGCAAAGCAAGACGCTGATGCGCTTCCTGCTGAACACCTATCTCGGCGGTACGCCGCTTGC
CACGCGTCAGATCCTGATCGACCTGCAAAATCTATGA

Upstream 100 bases:

>100_bases
CGGATGGACATGGAGAAGCTGTTCGACGGCCCCGTGTACCTCGAGACCTTCGTGAAGGTGAAGAGCGGCTGGGCCGACAA
CGAGGCGGGGCTGCGCGCCT

Downstream 100 bases:

>100_bases
GCTTCTTCCTGACAACGCCCACCGCCATCGACCTCGGCGTGAACATCGACCACGTCGCGACGCTGCGCAATGTGCGCGGC
ACGACCTATCCCGATCCGAT

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MGTNDALTSTEDAVTAGANDAPLPAPPEPPRKARRATSRTSDFRVAEQPAYVLHSYPYRETSLIIDVLTRDHGRLALVAK
GAKRPHSALRGVLQTFQPLLLSWSGKSEVRTLTGAEWVGGMLPLGGDGLLCGFYANELLVKFCAREDPQPPLFNHYVLTL
TRLAHGEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPDRRYVFDPERGVRNADDEVPSHWPVISGQTLLDMEQDDY
HRAQTVAQSKTLMRFLLNTYLGGTPLATRQILIDLQNL

Sequences:

>Translated_278_residues
MGTNDALTSTEDAVTAGANDAPLPAPPEPPRKARRATSRTSDFRVAEQPAYVLHSYPYRETSLIIDVLTRDHGRLALVAK
GAKRPHSALRGVLQTFQPLLLSWSGKSEVRTLTGAEWVGGMLPLGGDGLLCGFYANELLVKFCAREDPQPPLFNHYVLTL
TRLAHGEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPDRRYVFDPERGVRNADDEVPSHWPVISGQTLLDMEQDDY
HRAQTVAQSKTLMRFLLNTYLGGTPLATRQILIDLQNL
>Mature_277_residues
GTNDALTSTEDAVTAGANDAPLPAPPEPPRKARRATSRTSDFRVAEQPAYVLHSYPYRETSLIIDVLTRDHGRLALVAKG
AKRPHSALRGVLQTFQPLLLSWSGKSEVRTLTGAEWVGGMLPLGGDGLLCGFYANELLVKFCAREDPQPPLFNHYVLTLT
RLAHGEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPDRRYVFDPERGVRNADDEVPSHWPVISGQTLLDMEQDDYH
RAQTVAQSKTLMRFLLNTYLGGTPLATRQILIDLQNL

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

Organism=Escherichia coli, GI2367140, Length=230, Percent_Identity=37.8260869565217, Blast_Score=126, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 30912; Mature: 30780

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTNDALTSTEDAVTAGANDAPLPAPPEPPRKARRATSRTSDFRVAEQPAYVLHSYPYRE
CCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCEECCCCHHHHHCCCCCH
TSLIIDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSEVRTLTGAEWVGG
HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHCC
MLPLGGDGLLCGFYANELLVKFCAREDPQPPLFNHYVLTLTRLAHGEPAVQVLRSFERVL
CCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LRETGYAMALNRTVARRAVEPDRRYVFDPERGVRNADDEVPSHWPVISGQTLLDMEQDDY
HHHCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCEEECCCCHHH
HRAQTVAQSKTLMRFLLNTYLGGTPLATRQILIDLQNL
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEECCC
>Mature Secondary Structure 
GTNDALTSTEDAVTAGANDAPLPAPPEPPRKARRATSRTSDFRVAEQPAYVLHSYPYRE
CCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCEECCCCHHHHHCCCCCH
TSLIIDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSEVRTLTGAEWVGG
HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHCC
MLPLGGDGLLCGFYANELLVKFCAREDPQPPLFNHYVLTLTRLAHGEPAVQVLRSFERVL
CCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LRETGYAMALNRTVARRAVEPDRRYVFDPERGVRNADDEVPSHWPVISGQTLLDMEQDDY
HHHCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCEEECCCCHHH
HRAQTVAQSKTLMRFLLNTYLGGTPLATRQILIDLQNL
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA