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The map label for this gene is pocR [H]

Identifier: 78065395

GI number: 78065395

Start: 836291

End: 837226

Strand: Reverse

Name: pocR [H]

Synonym: Bcep18194_A3921

Alternate gene names: 78065395

Gene position: 837226-836291 (Counterclockwise)

Preceding gene: 78065397

Following gene: 78065393

Centisome position: 22.66

GC content: 70.94

Gene sequence:

>936_bases
ATGAGCCTCTCCCTCTCCGCGCCCCCCGTCGACCACCCCGCCGCCCTGACTGACGGCGATCTGCCGTTCGGCCTGCAGTC
GGTCTGCCGCACGCTCGCGGACGCGAACGCGACGCTCGAACGCTTCGCGTGGCTCGGCGACCATCTGGCGATCGCCGAAT
GGACGCGGATCACCGACGAAAGCGAGACGGTCTACGAGCAGCCGGGGCACCACACGCTGTCGTGCTACCTCGACGGCGGC
TACCGGACCGAACGCCAGCGCGTGCCGCGCTACGGCGCGCCGAGCCTGCTGTGCGCGCTGCCGGGCGACCATGAATCGCG
CTGGTGGGTGCGCGGCGAGATGCACTTCATCCACCTGTATTTCCTGCCCGAACACTTCACGCAGCGCGCGATCCGCGAAC
TCGACCGCGAGCCGCGCGAGCTGAAGCTCGCCGACCGCACCTATTTCGAGGATGCGCGCGTCGCCGCGCTGCTGCGCTCG
CTCGCGCTGGACGGCTGGGACGATGCCGACGAACGGCTGCGCGTGAACGAGACCGCGCACGAGGTGCTGAGCCTGCTGCT
GCGCGGGCAGAGCACGACCCGCACCGACACGTCGTTCCGCGGCGGACTCGCACCGGCCGTGCGCCGCCGCGTGCGCGACT
ACATCGACACGTACCTGACGCAACCGCTGACGCTCGGCGAACTCGCCGACGTGGCCGCGCTGTCCGAGTACCACTTCTCG
CGGATGTTCCGGCTGTCGTTCGGCCGTGCGCCGCACGCATGGGTGGCCGAGCAACGGCTGGCGCGGGCACGCGAGCTGCT
GCGCACGACGGCGCTGCCGCTCGCGCAGATCGCGGCCGACTGCGGCTACGCGAACGCCGGCCATTTCAGCCATCGCTTCC
GCGACGCGCACGGCACCACGCCGAATACGTACCGGCGCGCAATGCAAGGCCGCTGA

Upstream 100 bases:

>100_bases
CCGACTATGCCCCCGCCCGGCGCGCGCCGATTGTCCGGAATTGCGGTCTTTTTCGGGCTGCCGCACGCGGCGCCGCGCGC
CCGCTTATACTCGGCCCATC

Downstream 100 bases:

>100_bases
GCGCGGCCCCTTTCCTCGTTTTCCCGCTTACGCGCCGCGCCGCGACAGTTCCTGTTCGAGCGCCGCGACGCCGGCCGGCA
GGTCGACCGGCACCTTCAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSLSLSAPPVDHPAALTDGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRITDESETVYEQPGHHTLSCYLDGG
YRTERQRVPRYGAPSLLCALPGDHESRWWVRGEMHFIHLYFLPEHFTQRAIRELDREPRELKLADRTYFEDARVAALLRS
LALDGWDDADERLRVNETAHEVLSLLLRGQSTTRTDTSFRGGLAPAVRRRVRDYIDTYLTQPLTLGELADVAALSEYHFS
RMFRLSFGRAPHAWVAEQRLARARELLRTTALPLAQIAADCGYANAGHFSHRFRDAHGTTPNTYRRAMQGR

Sequences:

>Translated_311_residues
MSLSLSAPPVDHPAALTDGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRITDESETVYEQPGHHTLSCYLDGG
YRTERQRVPRYGAPSLLCALPGDHESRWWVRGEMHFIHLYFLPEHFTQRAIRELDREPRELKLADRTYFEDARVAALLRS
LALDGWDDADERLRVNETAHEVLSLLLRGQSTTRTDTSFRGGLAPAVRRRVRDYIDTYLTQPLTLGELADVAALSEYHFS
RMFRLSFGRAPHAWVAEQRLARARELLRTTALPLAQIAADCGYANAGHFSHRFRDAHGTTPNTYRRAMQGR
>Mature_310_residues
SLSLSAPPVDHPAALTDGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRITDESETVYEQPGHHTLSCYLDGGY
RTERQRVPRYGAPSLLCALPGDHESRWWVRGEMHFIHLYFLPEHFTQRAIRELDREPRELKLADRTYFEDARVAALLRSL
ALDGWDDADERLRVNETAHEVLSLLLRGQSTTRTDTSFRGGLAPAVRRRVRDYIDTYLTQPLTLGELADVAALSEYHFSR
MFRLSFGRAPHAWVAEQRLARARELLRTTALPLAQIAADCGYANAGHFSHRFRDAHGTTPNTYRRAMQGR

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=112, Percent_Identity=29.4642857142857, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35354; Mature: 35223

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSLSAPPVDHPAALTDGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRITDE
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHCCCC
SETVYEQPGHHTLSCYLDGGYRTERQRVPRYGAPSLLCALPGDHESRWWVRGEMHFIHLY
CHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCCCCEEEECCCCCCCCEEEECCEEEEEEE
FLPEHFTQRAIRELDREPRELKLADRTYFEDARVAALLRSLALDGWDDADERLRVNETAH
ECCHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHHH
EVLSLLLRGQSTTRTDTSFRGGLAPAVRRRVRDYIDTYLTQPLTLGELADVAALSEYHFS
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RMFRLSFGRAPHAWVAEQRLARARELLRTTALPLAQIAADCGYANAGHFSHRFRDAHGTT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCC
PNTYRRAMQGR
HHHHHHHHCCC
>Mature Secondary Structure 
SLSLSAPPVDHPAALTDGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRITDE
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHCCCC
SETVYEQPGHHTLSCYLDGGYRTERQRVPRYGAPSLLCALPGDHESRWWVRGEMHFIHLY
CHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCCCCEEEECCCCCCCCEEEECCEEEEEEE
FLPEHFTQRAIRELDREPRELKLADRTYFEDARVAALLRSLALDGWDDADERLRVNETAH
ECCHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHHH
EVLSLLLRGQSTTRTDTSFRGGLAPAVRRRVRDYIDTYLTQPLTLGELADVAALSEYHFS
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RMFRLSFGRAPHAWVAEQRLARARELLRTTALPLAQIAADCGYANAGHFSHRFRDAHGTT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCC
PNTYRRAMQGR
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]