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The map label for this gene is yggS [C]

Identifier: 78065293

GI number: 78065293

Start: 717276

End: 718049

Strand: Reverse

Name: yggS [C]

Synonym: Bcep18194_A3817

Alternate gene names: 78065293

Gene position: 718049-717276 (Counterclockwise)

Preceding gene: 78065294

Following gene: 78065292

Centisome position: 19.44

GC content: 69.25

Gene sequence:

>774_bases
ATGGGCGGATCGATGCGTCGCGTGCCGCGGCGCATCCACACCATGCCTGCTTCCGTGCCTGCTTCCGTGCCCGTCATGTC
CGATCTCGCCGCCCGTCTCGAATCCGTTCATCAGCGCATCGCCGACGCCGCCCGTGCGGCCGGCCGCGATCCCGCCACCG
TGTCGCTGCTCGCCGTGTCCAAAACGTTTCCCGCCGACGACGTGCGCGCCGCGCATGCGGCCGGGCAGCGTGCCTTCGGC
GAAAACTACGTGCAGGAATCGATCGACAAGATCGATGCGCTCGCCGACCTGCGCGCGGACCTCGAATGGCATTTCATCGG
GCCGCTGCAATCGAACAAGACGCGCCCGGTTGCCGAACGCTTCGACTGGGTCCATTCGGTCGACCGGCTGAAGATCGCGC
AACGCCTGTCGGAACAGCGCCCCGCGCACCTGCCGCCGCTCAATGTGTGCGTGCAGGTGAACATCAGCGGCGAGGCGTCG
AAGAGCGGCGTTGCACCGGGCGACGTGGCCGAGGTTGCGCGCGCGGTCGCCGCGCTGCCGTCGCTGCGGCTGCGCGGCCT
GATGGCGATTCCCGAACCGGCCGGCGACACCGAAGCGCAACGCGCACCGCATCGTGCGCTGCGCGCGCTGTTCGACACGT
TGCGCGCCGACGGCCTGCCGCTCGACACATTGTCGATGGGCATGTCCGCCGATCTCGACGCGGCGGTGCTCGAAGGCGCG
ACGATCGTGCGCGTCGGCACCGCGATCTTCGGCGCGCGCGATTACTCGCACTAA

Upstream 100 bases:

>100_bases
TCGCCCACTGGATCCAGCTCGTCGAGCATCTGCTGTACGGCTAGGGCCGGTTCATGCGAATGACGGATGGGCGCCGGGCC
TCGCGCGCGGCGTCCGTATA

Downstream 100 bases:

>100_bases
ACGCCGCCTCCCTTACGCCCTACCGTTCACTCACTCGCTCATTCGGACATCATGAAAATCGCATTCATCGGCGGCGGCAA
CATGGCCGCGGCCCTGATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MGGSMRRVPRRIHTMPASVPASVPVMSDLAARLESVHQRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFG
ENYVQESIDKIDALADLRADLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEAS
KSGVAPGDVAEVARAVAALPSLRLRGLMAIPEPAGDTEAQRAPHRALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGA
TIVRVGTAIFGARDYSH

Sequences:

>Translated_257_residues
MGGSMRRVPRRIHTMPASVPASVPVMSDLAARLESVHQRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFG
ENYVQESIDKIDALADLRADLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEAS
KSGVAPGDVAEVARAVAALPSLRLRGLMAIPEPAGDTEAQRAPHRALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGA
TIVRVGTAIFGARDYSH
>Mature_256_residues
GGSMRRVPRRIHTMPASVPASVPVMSDLAARLESVHQRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGE
NYVQESIDKIDALADLRADLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASK
SGVAPGDVAEVARAVAALPSLRLRGLMAIPEPAGDTEAQRAPHRALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGAT
IVRVGTAIFGARDYSH

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=238, Percent_Identity=41.1764705882353, Blast_Score=134, Evalue=6e-32,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=56.4655172413793, Blast_Score=255, Evalue=2e-69,
Organism=Caenorhabditis elegans, GI17533025, Length=237, Percent_Identity=36.7088607594937, Blast_Score=127, Evalue=4e-30,
Organism=Saccharomyces cerevisiae, GI6319435, Length=242, Percent_Identity=36.7768595041322, Blast_Score=127, Evalue=2e-30,
Organism=Drosophila melanogaster, GI45550861, Length=244, Percent_Identity=38.1147540983607, Blast_Score=124, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 27479; Mature: 27347

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGSMRRVPRRIHTMPASVPASVPVMSDLAARLESVHQRIADAARAAGRDPATVSLLAVS
CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
KTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLRADLEWHFIGPLQSNKTRPVAER
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHH
FDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPGDVAEVARAVAALP
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
SLRLRGLMAIPEPAGDTEAQRAPHRALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGA
HHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHCCC
TIVRVGTAIFGARDYSH
HHEEHHHHHHCCCCCCC
>Mature Secondary Structure 
GGSMRRVPRRIHTMPASVPASVPVMSDLAARLESVHQRIADAARAAGRDPATVSLLAVS
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
KTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLRADLEWHFIGPLQSNKTRPVAER
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHH
FDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPGDVAEVARAVAALP
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
SLRLRGLMAIPEPAGDTEAQRAPHRALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGA
HHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHCCC
TIVRVGTAIFGARDYSH
HHEEHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]