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The map label for this gene is araH

Identifier: 78065181

GI number: 78065181

Start: 593996

End: 595012

Strand: Direct

Name: araH

Synonym: Bcep18194_A3705

Alternate gene names: 78065181

Gene position: 593996-595012 (Clockwise)

Preceding gene: 78065180

Following gene: 78065182

Centisome position: 16.08

GC content: 65.68

Gene sequence:

>1017_bases
ATGCAAGTCAACGAAAACCTTGGCAGCGCCGCCGTGAAGCCGTCGGCCGACGCGCTGGTGCCGCAGCAGAGCGATCGCCA
GAAGTGGTGGCAGCATCTGACCGAATACAGCCTGATCGCGATCTTCGCGGTGATGTTCATCACGATGTCGCTCACCGTCG
ATCACTTCTTCTCGATCGACAACATGCTCGGCCTCGCGCTGTCGATCTCGCAGATCGGGATGGTCGCGTGCACGATGATG
TTCTGTCTCGCGTCGCGCGACTTCGACCTGTCGATCGGCTCGACCGTCGCGTTCTCCGGCGTGCTGTGCGCGATGGTGCT
GAACGCGACCGACAACACGTTCGTCGCGATCATCGCGGCGGTCGCGGCCGGCGCCGCGATCGGCTTCGTGAACGGCGCGG
TGATCGCATACCTGCGCATCAACGCGCTGATCACCACGCTCGCGACGATGGAGATCGTGCGCGGGCTCGGCTTCATCGTG
TCGAAGGGGCAGGCGGTCGGCGTGTCGTCGGATACGTTCATCGCGCTCGGCGGGCTGTCGCTGTTCGGCGTGTCGCTGCC
GATCTGGGTCACGCTGCTGTGCTTCATCGCGTTCGGCGTGCTGCTGAACCAGACGGTATACGGCCGCAACACGCTCGCGA
TCGGCGGTAACCCGGAAGCGTCGCGGCTCGCGGGGATCAACGTCGAACGCACGCGCGTGTACATCTTCCTGATCCAGGGC
GCGGTGACGGCGCTCGCGGGCGTGATCCTCGCGTCGCGCATCACGTCGGGCCAGCCGAACGCCGCGCAGGGCTTCGAGCT
GAACGTGATCTCGGCGTGCGTGCTCGGCGGCGTGTCGCTGATGGGCGGCCGCGCGACGATCTCGGGCGTCGTGATCGGCG
TGCTGATCATGGGCACCGTCGAGAACGTGATGAACCTGCTGAACATCGACGCGTTCTACCAGTACCTCGTGCGCGGCGCG
ATCCTGCTCGCGGCCGTGCTGCTCGACCAGTTGAAGAACCGCGGCGTCCGCGACTGA

Upstream 100 bases:

>100_bases
CCGCAGACGAGCGCCGTCGAGGCGGCCTGACACGGAACACGACAATCGAATCGGACACGCGCGGCGCGGGCCGTGCGATG
CAGGAGCAGGAGACACAATC

Downstream 100 bases:

>100_bases
CCCGATCCGCTCTTACGGAGACGAACCGCATGACCATCGACACTTCCGCGCACGACCCGCACGCCGCGAGCCATGCGCGC
TATGCACGGTATCCGAGCCT

Product: L-arabinose transporter permease protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MQVNENLGSAAVKPSADALVPQQSDRQKWWQHLTEYSLIAIFAVMFITMSLTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIIAAVAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SKGQAVGVSSDTFIALGGLSLFGVSLPIWVTLLCFIAFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGA
ILLAAVLLDQLKNRGVRD

Sequences:

>Translated_338_residues
MQVNENLGSAAVKPSADALVPQQSDRQKWWQHLTEYSLIAIFAVMFITMSLTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIIAAVAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SKGQAVGVSSDTFIALGGLSLFGVSLPIWVTLLCFIAFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGA
ILLAAVLLDQLKNRGVRD
>Mature_338_residues
MQVNENLGSAAVKPSADALVPQQSDRQKWWQHLTEYSLIAIFAVMFITMSLTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIIAAVAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SKGQAVGVSSDTFIALGGLSLFGVSLPIWVTLLCFIAFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGA
ILLAAVLLDQLKNRGVRD

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=303, Percent_Identity=57.7557755775578, Blast_Score=334, Evalue=5e-93,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=36.7741935483871, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1788896, Length=331, Percent_Identity=31.7220543806647, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1790524, Length=322, Percent_Identity=30.1242236024845, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=48.4848484848485, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787793, Length=245, Percent_Identity=34.2857142857143, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788471, Length=269, Percent_Identity=36.4312267657993, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI87082395, Length=244, Percent_Identity=30.327868852459, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1787794, Length=265, Percent_Identity=27.9245283018868, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693214, Length=236, Percent_Identity=29.6610169491525, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35550; Mature: 35550

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVNENLGSAAVKPSADALVPQQSDRQKWWQHLTEYSLIAIFAVMFITMSLTVDHFFSID
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIIAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
VAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSKGQAVGVSSDTFIALGGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEECCHH
LFGVSLPIWVTLLCFIAFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCHHHHCCCCEEHEEEEEEEHHH
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ENVMNLLNIDAFYQYLVRGAILLAAVLLDQLKNRGVRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQVNENLGSAAVKPSADALVPQQSDRQKWWQHLTEYSLIAIFAVMFITMSLTVDHFFSID
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIIAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
VAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSKGQAVGVSSDTFIALGGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEECCHH
LFGVSLPIWVTLLCFIAFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCHHHHCCCCEEHEEEEEEEHHH
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ENVMNLLNIDAFYQYLVRGAILLAAVLLDQLKNRGVRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]