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The map label for this gene is yecD [H]

Identifier: 78065078

GI number: 78065078

Start: 475102

End: 475653

Strand: Direct

Name: yecD [H]

Synonym: Bcep18194_A3602

Alternate gene names: 78065078

Gene position: 475102-475653 (Clockwise)

Preceding gene: 78065077

Following gene: 78065079

Centisome position: 12.86

GC content: 68.3

Gene sequence:

>552_bases
ATGGCAGGCACCGCAGTGATCGTGGTCGACATGCAGCGCGGGCTGGTGCAGCGGGCGCAGCCCGCTTACCGGCTCGATGA
CGTGGTATCGGGCATCAACCGTCTGACGGCGGCGGCACGCGCGGCGAACGCGCCCGTGTGCTTCGTGCAGCATGACGGCG
ATGCGGACGACGACATCGTGCCCGGCACGCCGGGCTGGGAGCTGCATGCGGGGCTGGCCGTCGGGAGCGACGACTGGCGC
GTGCGCAAGCAGGTGAGCGATTCGTTCCACGACACACCGCTCGCGGCGCAGCTCGACCGCCACGGTATCCGTTCGGTGCT
GATCTGCGGCTATGCGACCGAGTTCTGCGTCGATTCGGCCGCGCGCCGTGCGGCGCTGCTCGGCTACCGGACGACGGTCG
TGTCCGATCTGCACACGACGAACGAGCGCACGCACCTGTCGGCCGCGCAGATCGTCGCGCACCATCACTTCGTATGGCAA
AACAATACGCTGTCGGGCAACCCGGTGACGCCGCGTCCGCTCGCTGACGTTCTTGCGACGGAGTTCGCATGA

Upstream 100 bases:

>100_bases
GGCGATGCGAAGGCGTGGCTCGACGCACGCACGCAGCCGATCTGACACGACAAGCGATAACGGCCGGACCACGGCCGAGC
GACACAACCGAGGGCAAGCA

Downstream 100 bases:

>100_bases
CGATCAAGGCTGTGGTGTTCGATTTCGGCGGCGTGCTGATCGACTGGAGCCCCGAGTACCTTTACCGGGAGCTGATTCCC
GACGACACGGAGCGTCGCTG

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MAGTAVIVVDMQRGLVQRAQPAYRLDDVVSGINRLTAAARAANAPVCFVQHDGDADDDIVPGTPGWELHAGLAVGSDDWR
VRKQVSDSFHDTPLAAQLDRHGIRSVLICGYATEFCVDSAARRAALLGYRTTVVSDLHTTNERTHLSAAQIVAHHHFVWQ
NNTLSGNPVTPRPLADVLATEFA

Sequences:

>Translated_183_residues
MAGTAVIVVDMQRGLVQRAQPAYRLDDVVSGINRLTAAARAANAPVCFVQHDGDADDDIVPGTPGWELHAGLAVGSDDWR
VRKQVSDSFHDTPLAAQLDRHGIRSVLICGYATEFCVDSAARRAALLGYRTTVVSDLHTTNERTHLSAAQIVAHHHFVWQ
NNTLSGNPVTPRPLADVLATEFA
>Mature_182_residues
AGTAVIVVDMQRGLVQRAQPAYRLDDVVSGINRLTAAARAANAPVCFVQHDGDADDDIVPGTPGWELHAGLAVGSDDWRV
RKQVSDSFHDTPLAAQLDRHGIRSVLICGYATEFCVDSAARRAALLGYRTTVVSDLHTTNERTHLSAAQIVAHHHFVWQN
NTLSGNPVTPRPLADVLATEFA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=147, Percent_Identity=29.9319727891156, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 19757; Mature: 19626

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGTAVIVVDMQRGLVQRAQPAYRLDDVVSGINRLTAAARAANAPVCFVQHDGDADDDIV
CCCCEEEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
PGTPGWELHAGLAVGSDDWRVRKQVSDSFHDTPLAAQLDRHGIRSVLICGYATEFCVDSA
CCCCCCEEEECEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCHHHEEHHHHHHHHHHHHH
ARRAALLGYRTTVVSDLHTTNERTHLSAAQIVAHHHFVWQNNTLSGNPVTPRPLADVLAT
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHH
EFA
CCC
>Mature Secondary Structure 
AGTAVIVVDMQRGLVQRAQPAYRLDDVVSGINRLTAAARAANAPVCFVQHDGDADDDIV
CCCEEEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
PGTPGWELHAGLAVGSDDWRVRKQVSDSFHDTPLAAQLDRHGIRSVLICGYATEFCVDSA
CCCCCCEEEECEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCHHHEEHHHHHHHHHHHHH
ARRAALLGYRTTVVSDLHTTNERTHLSAAQIVAHHHFVWQNNTLSGNPVTPRPLADVLAT
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHH
EFA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]