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The map label for this gene is cdaR [H]

Identifier: 78050027

GI number: 78050027

Start: 5156634

End: 5157824

Strand: Reverse

Name: cdaR [H]

Synonym: XCV4471

Alternate gene names: 78050027

Gene position: 5157824-5156634 (Counterclockwise)

Preceding gene: 78050028

Following gene: 78050026

Centisome position: 99.6

GC content: 70.45

Gene sequence:

>1191_bases
ATGCTCACGCTCGACCGCACCCTGGCGCAGTCCATTGTCGACCGCGCGATGACCATCATCGACGGCAACGTCAATGTGAT
GGACCACTCCGGCGTCATCATCGCCAGCGGCGAGCCGGCGCGGATCGGCCAGCTGCACGAAGGTGCGTTGCTGGTGCTGT
CCCGGCAGGGCCGGGTGGAGATCGACGCCGCCCTGGCGCAGCAGCTGGATGCGGTGCGCCCCGGCGTCAACCTGCCGCTG
ATCGCCGAGGGCCGCATCGTCGGCTGCGTCGGGCTGACCGGCGACCCGCAGCGCATCGGGCAGCAGGCCGAGCTGGTGCG
CATGGCCGCCGAAGCGATGCTGGAACAGGCCGGGCTGCTGCGCCTGCTGGCCCGCGACGCGCGCCTGCGCGAAGAGGTCA
CGCTGGGCCTGATCCGGCCCGACGGCCCGACCCCGGCGCTGGCCGGCTGGGCCGAGCGGCTCGGGATCGCGCTGGACCTG
CCGCGCGTGGCCGCGGTAATCGAAGTGGAAAGCGATAGCCTGGACCTGGACGCGATGCTGGTGGAACTGCAGCGCCTGCA
CACCCTGCTGTCCACGCCCGAGCGCGGCAACCTGATCGCCGCCACCGCGCTCAACGAGCTGGTGGTGCTCAAGCCGGCAC
TGGACCGGCGTGGCCACTGGGACGTGGCGGAGCAACGCCGTCGCGCGCACAGCCTGCTCGAGCGCATGCGCGCCAGCAGC
CGGCTGCGGATCCGGCTGGCCCTGGGCCAGTATTTTCCGCAGTCCAACGGCCTGGCGTTGTCGCACCAGATCGCGCGCAC
CACCATGCGCATCGGCAAGGCGCGCACCCCGTACGCCGACGCCTTCTTCTACGACGATTACCGCCTGCCGGTGCTGGTGG
ACGACCTGCGCCAGGCCTGGCAGGCCGAGGAATTGCGCAAGCCGCTGCAGGCACTGCTGGCGCAGGACCGTCGCAGTCAG
TTGCTGAAGACCTTGTCGGTCTGGTTCGGCGCCGGCATGCGCATGGCCCCCACCGCCAAGGCGCTGGGCATTCATCGCAA
CACCCTGGATTACCGCATGCAGCGCATACAGGAACTGTGCGCGGTGGACCTGGGCAACACCGACGACTGCATGCGCCTGT
ACCTGGCGCTGCGGATGCGCCACGACAGCGCCGCAACCACGCCGAACACCGACGCGCACGCCCCCGACTGA

Upstream 100 bases:

>100_bases
GGGCATCGGCCGCAACTCCTCCCGTCATACACCTGCCAAACATCCGCGAAGCGAACATGCCACCGTGACCGCCCCTGATC
GCGGCAACAGACCCCCGCCC

Downstream 100 bases:

>100_bases
GCGGCGCCACAACCGCCGCAACGCTGCCCTGTGCAGTGGCGCACGGAACGCCGCCTTGGCTGGTATGCGCAGTCCGCTAG
ACTGCGCGGATTGCCCGGCC

Product: sugar diacid utilization regulator

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MLTLDRTLAQSIVDRAMTIIDGNVNVMDHSGVIIASGEPARIGQLHEGALLVLSRQGRVEIDAALAQQLDAVRPGVNLPL
IAEGRIVGCVGLTGDPQRIGQQAELVRMAAEAMLEQAGLLRLLARDARLREEVTLGLIRPDGPTPALAGWAERLGIALDL
PRVAAVIEVESDSLDLDAMLVELQRLHTLLSTPERGNLIAATALNELVVLKPALDRRGHWDVAEQRRRAHSLLERMRASS
RLRIRLALGQYFPQSNGLALSHQIARTTMRIGKARTPYADAFFYDDYRLPVLVDDLRQAWQAEELRKPLQALLAQDRRSQ
LLKTLSVWFGAGMRMAPTAKALGIHRNTLDYRMQRIQELCAVDLGNTDDCMRLYLALRMRHDSAATTPNTDAHAPD

Sequences:

>Translated_396_residues
MLTLDRTLAQSIVDRAMTIIDGNVNVMDHSGVIIASGEPARIGQLHEGALLVLSRQGRVEIDAALAQQLDAVRPGVNLPL
IAEGRIVGCVGLTGDPQRIGQQAELVRMAAEAMLEQAGLLRLLARDARLREEVTLGLIRPDGPTPALAGWAERLGIALDL
PRVAAVIEVESDSLDLDAMLVELQRLHTLLSTPERGNLIAATALNELVVLKPALDRRGHWDVAEQRRRAHSLLERMRASS
RLRIRLALGQYFPQSNGLALSHQIARTTMRIGKARTPYADAFFYDDYRLPVLVDDLRQAWQAEELRKPLQALLAQDRRSQ
LLKTLSVWFGAGMRMAPTAKALGIHRNTLDYRMQRIQELCAVDLGNTDDCMRLYLALRMRHDSAATTPNTDAHAPD
>Mature_396_residues
MLTLDRTLAQSIVDRAMTIIDGNVNVMDHSGVIIASGEPARIGQLHEGALLVLSRQGRVEIDAALAQQLDAVRPGVNLPL
IAEGRIVGCVGLTGDPQRIGQQAELVRMAAEAMLEQAGLLRLLARDARLREEVTLGLIRPDGPTPALAGWAERLGIALDL
PRVAAVIEVESDSLDLDAMLVELQRLHTLLSTPERGNLIAATALNELVVLKPALDRRGHWDVAEQRRRAHSLLERMRASS
RLRIRLALGQYFPQSNGLALSHQIARTTMRIGKARTPYADAFFYDDYRLPVLVDDLRQAWQAEELRKPLQALLAQDRRSQ
LLKTLSVWFGAGMRMAPTAKALGIHRNTLDYRMQRIQELCAVDLGNTDDCMRLYLALRMRHDSAATTPNTDAHAPD

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=376, Percent_Identity=51.8617021276596, Blast_Score=380, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 43779; Mature: 43779

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLDRTLAQSIVDRAMTIIDGNVNVMDHSGVIIASGEPARIGQLHEGALLVLSRQGRVE
CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCCCCCEEEEEECCCCEE
IDAALAQQLDAVRPGVNLPLIAEGRIVGCVGLTGDPQRIGQQAELVRMAAEAMLEQAGLL
HHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLLARDARLREEVTLGLIRPDGPTPALAGWAERLGIALDLPRVAAVIEVESDSLDLDAML
HHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCEEEECCCEEEEEEECCCCCCHHHHH
VELQRLHTLLSTPERGNLIAATALNELVVLKPALDRRGHWDVAEQRRRAHSLLERMRASS
HHHHHHHHHHCCCCCCCEEEEEHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
RLRIRLALGQYFPQSNGLALSHQIARTTMRIGKARTPYADAFFYDDYRLPVLVDDLRQAW
CEEEEEEEHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH
QAEELRKPLQALLAQDRRSQLLKTLSVWFGAGMRMAPTAKALGIHRNTLDYRMQRIQELC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHH
AVDLGNTDDCMRLYLALRMRHDSAATTPNTDAHAPD
HCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLTLDRTLAQSIVDRAMTIIDGNVNVMDHSGVIIASGEPARIGQLHEGALLVLSRQGRVE
CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCCCCCEEEEEECCCCEE
IDAALAQQLDAVRPGVNLPLIAEGRIVGCVGLTGDPQRIGQQAELVRMAAEAMLEQAGLL
HHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLLARDARLREEVTLGLIRPDGPTPALAGWAERLGIALDLPRVAAVIEVESDSLDLDAML
HHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCEEEECCCEEEEEEECCCCCCHHHHH
VELQRLHTLLSTPERGNLIAATALNELVVLKPALDRRGHWDVAEQRRRAHSLLERMRASS
HHHHHHHHHHCCCCCCCEEEEEHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
RLRIRLALGQYFPQSNGLALSHQIARTTMRIGKARTPYADAFFYDDYRLPVLVDDLRQAW
CEEEEEEEHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH
QAEELRKPLQALLAQDRRSQLLKTLSVWFGAGMRMAPTAKALGIHRNTLDYRMQRIQELC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHH
AVDLGNTDDCMRLYLALRMRHDSAATTPNTDAHAPD
HCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]