| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is 78050023
Identifier: 78050023
GI number: 78050023
Start: 5147967
End: 5150441
Strand: Reverse
Name: 78050023
Synonym: XCV4467
Alternate gene names: NA
Gene position: 5150441-5147967 (Counterclockwise)
Preceding gene: 78050024
Following gene: 78050016
Centisome position: 99.46
GC content: 66.18
Gene sequence:
>2475_bases ATGCTGTCAGTCGTACCGCCCAACCGTTCCACTGCGCGTGCTGCGCGCACGTCGTTCTGGCGCCGCGCCGCGGTCGGTCT GTGCCTGCTTGGCGTGGCCATGTCCGGCCCGCTGGCCGCGCAAGACCCGGCGCAGGTCAATACCTTCATCGGCAGCAAGG ACGACGGCAATACCTATCCGGGCGCCTCGGCGCCATTTGGCCTGATCCAGGTCAGCCCGATCGGCGCGCACTACGCCGGC TGGCGCTATGACGACCCCAGCATTCGCGGCTTCGGCCATTCGTTCCTGTCCGGCGCCGGATGCTGGGAGCAGGGCGGGCA GGTGTCGATACTGCCGGTGACCGGCCGCATCGGCCCCGGCGGCGACTTCGACACCAACGATGCCAAGGCCTTCGACCAGA AACGCTATGCCGCGCGTTACACGCACGATGGCGAAGTCGGCCAGGCCGGCTATTACAAGGTGCGGCTCACCGATTACGGC AGCATCGACGCCGAAGCCAGCGCGCTGACCCGCGCCGCGACCGAGCGCTACACCTTCGCGCCGGGTGCCGACACCGGCCA TGTGCTGGTCAACGTGGCGCAGGCCAACGACCGCCATGTGGTGATCGGCAGCCAGGTGCAGATCGTCGGCGACCGCGTGG TCGAGGGCAAACTGACCACGCAGAGTTTCTGCGGTGGCCACGAATACACCACCTGGTTCCGGCTGGAATTCGATCGCCCG TTCACCGCGCATGGCGTCTGGGGCGAAGAGGGCGGTGTGCCCGGCGCGCGTCACGGCATGGGCGGCGAACTCAAACCCAA CGGTGCCTGGCTCAGCTTCCCGCTGGGCAAAGACAAGCGCGCGCGTGCGGTGACCGTGGTCAGCGCCATCTCGCATGTGG ATGCGCAAGGCGCCCGCAGCAACCTGCGTGCCGATGGCATGCAGGGCGGCAAACTGCTCAGTCTTGAACAGATGCGCCAA CGCGCGCAGCAGGCCTGGCGCAATGCGTTGGCCAGCATGCAAGTGGAAGGCGCCAGCAACGACGAGCGTTCCGTGGCCTA TACCGCGCTGTATCACGCCTTGCTGCAGCCGCTGACCGGCAGCGATGCCGATGGCCGCTATCGCGGCTACGACGATGCGA TCCATCGCGCCGATGGCTGGACCTACTACGAGTATTTTTCGCTGTGGGATACCTACCGCTCGCAAAACCAGCTGCTGGCC TTGCTGCAGCCAACGCGCGCGCGCGACATCGGCCGCTCGTTGCTGGCGATCCAGCAGCAAGGCGGCTGGCTGCCGCGTTG GGGCTATGCCAACTACGACACCAACATCATGACCGGCGACCCGGTCACCCCGTTCCTGGTGGATCTGTGGCGCTTCGGCG CGTTGCAGGGTAACGAGGCGCAGGCGTATGCAGCGCTGCGCCAGAATGCGTTCGGCCAGCCGCCGATCAATTCGCGCCAC GCCGGGCGCTCGGGCAATGCCAACTATCTGGCCAACGGCTTCGTGCAATACGACCGTGCGTTTCCCTCCAAGGGCATGGA CGTGGACCCGCATCACGGCGGTTCGGCCACGCTGGAATACGCGCTGGCCGATTGCGCGCTCGCACAGATGGCGCAAGCGC TGGGCCACGGCGATGACAGCGCGCAGCTGCGCAAACGCGGCGGCAACTGGCACAACGTCTGGGATGCGGATGTGCGCGAT ACCGAGACCGGCTTTGCCGGCTTCCCGCGCCCGCGGCTGGAAGACGGCAGCTGGTATGCGCCATCCGACGATCGCTACAG CCCACGCTCCGAGCACGGCTTCCACGAAGGCACAGCCTGGCAATACCAGTGGCTGGTCCAGCAGGACATCCCCGGCATGC TGCAGGCCATGCATGGCCGCGAACACACCGGTAAACGCCTGGACGCTTTCTTCGCCTACGACGATCTACTGAAAGATCCG CTCACTGCCGCACGCACGCACTGGGTGGTCGGCCCGTACAGCTATTACAACCAGTACCGCTACAACCCCAACAACGAACC GGACCTGCACGCACCGTGGATGTACACGCTGATCGGGCAACCATGGAAGACCGCCACCGTGGTGCGCGCCGCGCAGCAGT TGTTCACCAATGCGCCCAACGGCGTCACCGGGAACGACGACCTTGGCACCATGTCGGCCTGGTATCTGTTCAGCGCGCTC GGCCTGTATCCGGCAGTGCCGGGTAGCGGGCAATTCCTGCTGCATGCGCCGCGTTTCAAGCGGGTCACGCTGAATCTGGG CAACGGCAAGCGCCTGCGCATCGACGCGCCCGGGGCCAACGGCCGCGCGCTGCAATACGTGGACAGCGTGCGTTGGAATG GAAAGCCGCAGCCGCAGGTGTTCCTGGATTGGGCGCAGCTGCAGCAGGGCGGCACGCTGTCGTTTGCGCTCACCCCGCAG GCGCCCACCCAAGGCTGGGGTACGCAAGCGGATGCATTGCCCACTTCATTCTGCGCCACACCTCAGGCGCAGTAA
Upstream 100 bases:
>100_bases GTTGCGCGCACGTGTCGTGCGTCGGTCGCTGCGCATCGCAGCGGCGGGCACGCGCCTTCCACCTGCGGCTTTGGCCGCCC TCTCCCCCAAGGGGTTCTGC
Downstream 100 bases:
>100_bases CACCACGGCGGTTGAAGCCCTCTCCCTGCGGGGCGAAAAGGCACAGCTTGCGCGCTACTGGCGCGCGTGCCTTGGAGAGA GAAGGACGCTCAGCCCGCCT
Product: putative sugar hydrolase precursor
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Glycosyl Hydrolase Family; Secreted Protein; Glycoside Hydrolase Family Protein; Sugar Hydrolase; Outer Membrane Protein; Exported Alpha-1 2-Mannosidase; Alpha-1 2-Mannosidase Protein; Immunoreactive; Antigen; Glycosyltransferase; Lipoprotein
Number of amino acids: Translated: 824; Mature: 824
Protein sequence:
>824_residues MLSVVPPNRSTARAARTSFWRRAAVGLCLLGVAMSGPLAAQDPAQVNTFIGSKDDGNTYPGASAPFGLIQVSPIGAHYAG WRYDDPSIRGFGHSFLSGAGCWEQGGQVSILPVTGRIGPGGDFDTNDAKAFDQKRYAARYTHDGEVGQAGYYKVRLTDYG SIDAEASALTRAATERYTFAPGADTGHVLVNVAQANDRHVVIGSQVQIVGDRVVEGKLTTQSFCGGHEYTTWFRLEFDRP FTAHGVWGEEGGVPGARHGMGGELKPNGAWLSFPLGKDKRARAVTVVSAISHVDAQGARSNLRADGMQGGKLLSLEQMRQ RAQQAWRNALASMQVEGASNDERSVAYTALYHALLQPLTGSDADGRYRGYDDAIHRADGWTYYEYFSLWDTYRSQNQLLA LLQPTRARDIGRSLLAIQQQGGWLPRWGYANYDTNIMTGDPVTPFLVDLWRFGALQGNEAQAYAALRQNAFGQPPINSRH AGRSGNANYLANGFVQYDRAFPSKGMDVDPHHGGSATLEYALADCALAQMAQALGHGDDSAQLRKRGGNWHNVWDADVRD TETGFAGFPRPRLEDGSWYAPSDDRYSPRSEHGFHEGTAWQYQWLVQQDIPGMLQAMHGREHTGKRLDAFFAYDDLLKDP LTAARTHWVVGPYSYYNQYRYNPNNEPDLHAPWMYTLIGQPWKTATVVRAAQQLFTNAPNGVTGNDDLGTMSAWYLFSAL GLYPAVPGSGQFLLHAPRFKRVTLNLGNGKRLRIDAPGANGRALQYVDSVRWNGKPQPQVFLDWAQLQQGGTLSFALTPQ APTQGWGTQADALPTSFCATPQAQ
Sequences:
>Translated_824_residues MLSVVPPNRSTARAARTSFWRRAAVGLCLLGVAMSGPLAAQDPAQVNTFIGSKDDGNTYPGASAPFGLIQVSPIGAHYAG WRYDDPSIRGFGHSFLSGAGCWEQGGQVSILPVTGRIGPGGDFDTNDAKAFDQKRYAARYTHDGEVGQAGYYKVRLTDYG SIDAEASALTRAATERYTFAPGADTGHVLVNVAQANDRHVVIGSQVQIVGDRVVEGKLTTQSFCGGHEYTTWFRLEFDRP FTAHGVWGEEGGVPGARHGMGGELKPNGAWLSFPLGKDKRARAVTVVSAISHVDAQGARSNLRADGMQGGKLLSLEQMRQ RAQQAWRNALASMQVEGASNDERSVAYTALYHALLQPLTGSDADGRYRGYDDAIHRADGWTYYEYFSLWDTYRSQNQLLA LLQPTRARDIGRSLLAIQQQGGWLPRWGYANYDTNIMTGDPVTPFLVDLWRFGALQGNEAQAYAALRQNAFGQPPINSRH AGRSGNANYLANGFVQYDRAFPSKGMDVDPHHGGSATLEYALADCALAQMAQALGHGDDSAQLRKRGGNWHNVWDADVRD TETGFAGFPRPRLEDGSWYAPSDDRYSPRSEHGFHEGTAWQYQWLVQQDIPGMLQAMHGREHTGKRLDAFFAYDDLLKDP LTAARTHWVVGPYSYYNQYRYNPNNEPDLHAPWMYTLIGQPWKTATVVRAAQQLFTNAPNGVTGNDDLGTMSAWYLFSAL GLYPAVPGSGQFLLHAPRFKRVTLNLGNGKRLRIDAPGANGRALQYVDSVRWNGKPQPQVFLDWAQLQQGGTLSFALTPQ APTQGWGTQADALPTSFCATPQAQ >Mature_824_residues MLSVVPPNRSTARAARTSFWRRAAVGLCLLGVAMSGPLAAQDPAQVNTFIGSKDDGNTYPGASAPFGLIQVSPIGAHYAG WRYDDPSIRGFGHSFLSGAGCWEQGGQVSILPVTGRIGPGGDFDTNDAKAFDQKRYAARYTHDGEVGQAGYYKVRLTDYG SIDAEASALTRAATERYTFAPGADTGHVLVNVAQANDRHVVIGSQVQIVGDRVVEGKLTTQSFCGGHEYTTWFRLEFDRP FTAHGVWGEEGGVPGARHGMGGELKPNGAWLSFPLGKDKRARAVTVVSAISHVDAQGARSNLRADGMQGGKLLSLEQMRQ RAQQAWRNALASMQVEGASNDERSVAYTALYHALLQPLTGSDADGRYRGYDDAIHRADGWTYYEYFSLWDTYRSQNQLLA LLQPTRARDIGRSLLAIQQQGGWLPRWGYANYDTNIMTGDPVTPFLVDLWRFGALQGNEAQAYAALRQNAFGQPPINSRH AGRSGNANYLANGFVQYDRAFPSKGMDVDPHHGGSATLEYALADCALAQMAQALGHGDDSAQLRKRGGNWHNVWDADVRD TETGFAGFPRPRLEDGSWYAPSDDRYSPRSEHGFHEGTAWQYQWLVQQDIPGMLQAMHGREHTGKRLDAFFAYDDLLKDP LTAARTHWVVGPYSYYNQYRYNPNNEPDLHAPWMYTLIGQPWKTATVVRAAQQLFTNAPNGVTGNDDLGTMSAWYLFSAL GLYPAVPGSGQFLLHAPRFKRVTLNLGNGKRLRIDAPGANGRALQYVDSVRWNGKPQPQVFLDWAQLQQGGTLSFALTPQ APTQGWGTQADALPTSFCATPQAQ
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90341; Mature: 90341
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSVVPPNRSTARAARTSFWRRAAVGLCLLGVAMSGPLAAQDPAQVNTFIGSKDDGNTYP CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCC GASAPFGLIQVSPIGAHYAGWRYDDPSIRGFGHSFLSGAGCWEQGGQVSILPVTGRIGPG CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCCEEEEEEEECCCCCC GDFDTNDAKAFDQKRYAARYTHDGEVGQAGYYKVRLTDYGSIDAEASALTRAATERYTFA CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEC PGADTGHVLVNVAQANDRHVVIGSQVQIVGDRVVEGKLTTQSFCGGHEYTTWFRLEFDRP CCCCCCEEEEEEEECCCCEEEECCEEEEECCEEECCCCCHHHHCCCCCCEEEEEEEECCC FTAHGVWGEEGGVPGARHGMGGELKPNGAWLSFPLGKDKRARAVTVVSAISHVDAQGARS EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC NLRADGMQGGKLLSLEQMRQRAQQAWRNALASMQVEGASNDERSVAYTALYHALLQPLTG CCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCC SDADGRYRGYDDAIHRADGWTYYEYFSLWDTYRSQNQLLALLQPTRARDIGRSLLAIQQQ CCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHC GGWLPRWGYANYDTNIMTGDPVTPFLVDLWRFGALQGNEAQAYAALRQNAFGQPPINSRH CCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCC AGRSGNANYLANGFVQYDRAFPSKGMDVDPHHGGSATLEYALADCALAQMAQALGHGDDS CCCCCCCCHHCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH AQLRKRGGNWHNVWDADVRDTETGFAGFPRPRLEDGSWYAPSDDRYSPRSEHGFHEGTAW HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCE QYQWLVQQDIPGMLQAMHGREHTGKRLDAFFAYDDLLKDPLTAARTHWVVGPYSYYNQYR EEEEEEHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHCEEEECCHHHHHCCC YNPNNEPDLHAPWMYTLIGQPWKTATVVRAAQQLFTNAPNGVTGNDDLGTMSAWYLFSAL CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH GLYPAVPGSGQFLLHAPRFKRVTLNLGNGKRLRIDAPGANGRALQYVDSVRWNGKPQPQV HHCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEECCCCCCCEEHHHHHHCCCCCCCCEE FLDWAQLQQGGTLSFALTPQAPTQGWGTQADALPTSFCATPQAQ EEEHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCC >Mature Secondary Structure MLSVVPPNRSTARAARTSFWRRAAVGLCLLGVAMSGPLAAQDPAQVNTFIGSKDDGNTYP CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCC GASAPFGLIQVSPIGAHYAGWRYDDPSIRGFGHSFLSGAGCWEQGGQVSILPVTGRIGPG CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCCEEEEEEEECCCCCC GDFDTNDAKAFDQKRYAARYTHDGEVGQAGYYKVRLTDYGSIDAEASALTRAATERYTFA CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEC PGADTGHVLVNVAQANDRHVVIGSQVQIVGDRVVEGKLTTQSFCGGHEYTTWFRLEFDRP CCCCCCEEEEEEEECCCCEEEECCEEEEECCEEECCCCCHHHHCCCCCCEEEEEEEECCC FTAHGVWGEEGGVPGARHGMGGELKPNGAWLSFPLGKDKRARAVTVVSAISHVDAQGARS EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC NLRADGMQGGKLLSLEQMRQRAQQAWRNALASMQVEGASNDERSVAYTALYHALLQPLTG CCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCC SDADGRYRGYDDAIHRADGWTYYEYFSLWDTYRSQNQLLALLQPTRARDIGRSLLAIQQQ CCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHC GGWLPRWGYANYDTNIMTGDPVTPFLVDLWRFGALQGNEAQAYAALRQNAFGQPPINSRH CCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCC AGRSGNANYLANGFVQYDRAFPSKGMDVDPHHGGSATLEYALADCALAQMAQALGHGDDS CCCCCCCCHHCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH AQLRKRGGNWHNVWDADVRDTETGFAGFPRPRLEDGSWYAPSDDRYSPRSEHGFHEGTAW HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCE QYQWLVQQDIPGMLQAMHGREHTGKRLDAFFAYDDLLKDPLTAARTHWVVGPYSYYNQYR EEEEEEHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHCEEEECCHHHHHCCC YNPNNEPDLHAPWMYTLIGQPWKTATVVRAAQQLFTNAPNGVTGNDDLGTMSAWYLFSAL CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH GLYPAVPGSGQFLLHAPRFKRVTLNLGNGKRLRIDAPGANGRALQYVDSVRWNGKPQPQV HHCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEECCCCCCCEEHHHHHHCCCCCCCCEE FLDWAQLQQGGTLSFALTPQAPTQGWGTQADALPTSFCATPQAQ EEEHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA