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The map label for this gene is xynB2 [H]

Identifier: 78049914

GI number: 78049914

Start: 5012429

End: 5013406

Strand: Reverse

Name: xynB2 [H]

Synonym: XCV4358

Alternate gene names: 78049914

Gene position: 5013406-5012429 (Counterclockwise)

Preceding gene: 78049915

Following gene: 78049913

Centisome position: 96.81

GC content: 62.58

Gene sequence:

>978_bases
ATGTTGAAACTCCGTTATCCGCTCACGCTTGTGCTGTTGCTGGGCGCGTATGCGTCCGCTGTTGCCGGGCCCATCGCTGC
CGGCAAGCAGCGCGTCCTGGGCAGCGCCTACAGCCCACAGCAAGCGCAGGGCTTCACCAACTACTGGAACGCCGACGTGC
CCGAAAATGCGGGCAAATGGGGCAGCGTCGAGCCCGTGCGCGGCCAGATGAACTGGGGCCCGCTCGACGAGGCTTACCAG
TTGGCCAAGCGCAACCACATGCAATTCCAGTTCCATGTCGGGCTCTGGGGTGCCCAGCAGCCGACGTGGGTGCGCAACCT
GCCGCCAAACGAGCAGCTTGCGGCGATCGAGCACTGGTTTGCCGCGATTGCGCAGCGCTACCCCGACATCGACTTGATGC
AGGTGGCCAACGAGACGCTGCCGGGTCACAACCAGCCGGACAATCGCCGCAGCGATACGGGCAACTATCTGCGGGCACTG
GGCGGCACCGGGGCGACCGGCGTGGACTGGGTGCTTGAGGCATTCCGCCTGGCACGCAAGTATTTCCCCCATACCAAGTT
GATGATCAACGACTACAACGTCACCGAGTACAACGACCAAGCCAGGCAGTATCTGCACACCATCCAGCTGCTGCAGCAAG
AACACCTGATCGATGCGATCGGCATCCAGGGGCACCTGTCGAGCAACGGCCCCTCAGTTTCGGTGCAGCGCGCCAACCTC
GACCTGTTGGCGTCCACCGGACTGCCGATCTACATAACCGAGTTCGACCTGGATGGGCGTACCGACGCTCAGCAGTTGGC
AGCCTGGCAGCGTTTCTTCCCGATGTTCTGGGAGCATCCGGCCGTGCGTGGCGTGAACGTGTGGGGTTTCCGTCACGGTC
TATGGCGTGAAAATGAAGGTGCGTATCTGATCAATTACGACGGCAGCGAACGCCCGGCCTTGACCTGGCTACGCAGCTAC
GTTGCCAGCAGGCCCTGA

Upstream 100 bases:

>100_bases
ACGCGGTTCCAGGTGTCTGCGCACTTGGCGTCGATCCGACGCACGTCAGCGCACCTGCTCCTTTCCGTAGCTGCCTTGCT
CACTTATCGAGGATGCCAAC

Downstream 100 bases:

>100_bases
CCGGGCTTCCTTCTCATTGTCCATAGGGCTGATATCGATCATGCGTTCTTCCGTGTTGTCCTTGCATCCCGATCGTTTGC
TGCCGGCCGATCCCGGCACG

Product: xylanase precursor

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MLKLRYPLTLVLLLGAYASAVAGPIAAGKQRVLGSAYSPQQAQGFTNYWNADVPENAGKWGSVEPVRGQMNWGPLDEAYQ
LAKRNHMQFQFHVGLWGAQQPTWVRNLPPNEQLAAIEHWFAAIAQRYPDIDLMQVANETLPGHNQPDNRRSDTGNYLRAL
GGTGATGVDWVLEAFRLARKYFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSNGPSVSVQRANL
DLLASTGLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNVWGFRHGLWRENEGAYLINYDGSERPALTWLRSY
VASRP

Sequences:

>Translated_325_residues
MLKLRYPLTLVLLLGAYASAVAGPIAAGKQRVLGSAYSPQQAQGFTNYWNADVPENAGKWGSVEPVRGQMNWGPLDEAYQ
LAKRNHMQFQFHVGLWGAQQPTWVRNLPPNEQLAAIEHWFAAIAQRYPDIDLMQVANETLPGHNQPDNRRSDTGNYLRAL
GGTGATGVDWVLEAFRLARKYFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSNGPSVSVQRANL
DLLASTGLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNVWGFRHGLWRENEGAYLINYDGSERPALTWLRSY
VASRP
>Mature_325_residues
MLKLRYPLTLVLLLGAYASAVAGPIAAGKQRVLGSAYSPQQAQGFTNYWNADVPENAGKWGSVEPVRGQMNWGPLDEAYQ
LAKRNHMQFQFHVGLWGAQQPTWVRNLPPNEQLAAIEHWFAAIAQRYPDIDLMQVANETLPGHNQPDNRRSDTGNYLRAL
GGTGATGVDWVLEAFRLARKYFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSNGPSVSVQRANL
DLLASTGLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNVWGFRHGLWRENEGAYLINYDGSERPALTWLRSY
VASRP

Specific function: Xylanase B contributes to hydrolyze hemicellulose, the major component of plant cell-walls [H]

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR005084
- InterPro:   IPR012291
- InterPro:   IPR018366
- InterPro:   IPR001919
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00553 CBM_2; PF03422 CBM_6; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 36757; Mature: 36757

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLRYPLTLVLLLGAYASAVAGPIAAGKQRVLGSAYSPQQAQGFTNYWNADVPENAGKW
CEEECHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCC
GSVEPVRGQMNWGPLDEAYQLAKRNHMQFQFHVGLWGAQQPTWVRNLPPNEQLAAIEHWF
CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCEECCCCCCHHHHHHHHHH
AAIAQRYPDIDLMQVANETLPGHNQPDNRRSDTGNYLRALGGTGATGVDWVLEAFRLARK
HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
YFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSNGPSVSVQRANL
HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCE
DLLASTGLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNVWGFRHGLWRENEG
EEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCCCC
AYLINYDGSERPALTWLRSYVASRP
CEEEEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKLRYPLTLVLLLGAYASAVAGPIAAGKQRVLGSAYSPQQAQGFTNYWNADVPENAGKW
CEEECHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCC
GSVEPVRGQMNWGPLDEAYQLAKRNHMQFQFHVGLWGAQQPTWVRNLPPNEQLAAIEHWF
CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCEECCCCCCHHHHHHHHHH
AAIAQRYPDIDLMQVANETLPGHNQPDNRRSDTGNYLRALGGTGATGVDWVLEAFRLARK
HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
YFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSNGPSVSVQRANL
HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCE
DLLASTGLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNVWGFRHGLWRENEG
EEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCCCC
AYLINYDGSERPALTWLRSYVASRP
CEEEEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2125205 [H]