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The map label for this gene is ytfM [H]

Identifier: 78049862

GI number: 78049862

Start: 4945211

End: 4946992

Strand: Reverse

Name: ytfM [H]

Synonym: XCV4306

Alternate gene names: 78049862

Gene position: 4946992-4945211 (Counterclockwise)

Preceding gene: 78049865

Following gene: 78049861

Centisome position: 95.53

GC content: 64.76

Gene sequence:

>1782_bases
ATGCTTAAAGTCGCGTTTGCTCTTTCCTTGCTGTGCACCCTGTTCGTTCCGCTGCAAGCGGTTGCTCGGGCAACCATCGA
CAAGATCGAAATCAAGGGGTTGGACGGCGGCGACGACGCCGAGATGATCGAGAACATCCAGGTCTCCCTGTCTCTGTATG
AGGCCGGGGGCAAGGAGCAGGGCGAATCGCGTCTGGAATATCTGTTGGCACAGGCCGAGCGGCAGACGCGTGAGGCGCTG
GAGCCGTTTGGCTATTACTCGCCGACCATTACGCTGGCCGCACCGCGCGCCGGCGACAGGGTGACCGTGGTGATCACGGT
GGACCGTGGCGAGCCGGTGCGGGTGCGCACCTCGCATATCTCGATCACCGGCTGGGCCGAGCAGGACCGCTACCTGGGCC
AGGACCTCAAGCAGTTCGAGCCGCGCGAGGGCCAGGTCTTCAGCCATCCGCAATACGAAGCCAGCAAGGTGCGCATCACC
CGGCGCCTGGCCGAGCGTGGCTACTTCGATGCCGACTTCACCCAGCGCCGCGTTGCGATCACGCGTGCCGAGCATGCGGC
CGACATCGATCTGAACTGGGACAGCGGCCGCCGCTACGACATGGGCAAGGTGCGCTTCGACTACGACTACTTCCGCGACG
GTCTGTTCGAACCGCTGGTGTACTGGGAGGAGGGCAGCTACTACCACGAAGGCAAGCTGGATCGGCTACGCGAGTCGCTG
ACCAAGCTGGATTACTTCAGCACCATCGATATCCAGCCCAAGCCCGAAGAAGCCGACGACCAGGGCCGCGTGCCGGTGGA
CGTCAAACTTACCCGCGCCAAGCGCACGGTCTACACCGCCGGCTTGAGCTACGGCAGCGAAAGCGGTGCCGGTGTGCGCG
GTGGCGTGGAGCGGCGTTACGTGAACTCGCGCGGCCACAAGATGGACACGCAGCTGGATTACGCGCAGAACCGCAAGAGC
CTGACGACAAGTTACCGCGTGCCGGCGTTCCGTTGGCTGGATGGCTGGTACACCGCCTCGGCGCGGCTGTACGACGAGCA
GACCGATTACATCGACCTGCGCAACGTCAAATTCACCGGCAGCCGCAGCGGCCAGATCAACGAGCGTTGGAGCGCGATCG
CCTCGATCAACGCCTTGCGCGAGCGGTGGCGTTTCAGCAGCGGCGACGATTTCGAAGGCGCGGTGTACGAGACCTCCACC
CTGATCTATCCGCAGTTGCAGGCCAACTACGTCAATGTCGACGACCGGCTGTTTCCGCGCAGCGGCGTGTCGGCGCAGAT
GTTCATCCGCGGCGGCGCCGAAGGTGCCGGCTCCGATACCAACTTCGGCCAGCTGTACGGCCAGCTGCGCTGGTTTCTGG
GCGCCGGCGACAACAGCCGGTTGATCCTGCGCGGCGAAGGTGGCACCACCTGGACCAGCGACCTGGTGGCGATGCCGCCG
AGCCTGCGCTTCTTCGCCGGTGGCGCGAACAGCATCCGCGGTTATGCGTTTCGCGAAGTCGGCCCGCGTACGCCCAAGCC
CGATGAATTCGCGCTGGGTGCCAAGAACGTGGTCACCGCCAGTGCCGAGTACGAGCATTACCTCAAGGGCGGCCCTTGGG
GCGGGGCAGTGTTCGTCGATGGCGGCAGCGCCTTCGATGACCGGCCCGACTGGCATACCGGCGTCGGCTTCGGCCTGCGC
TGGCGCTCGCCGGTGGGCCCGGTGCGGGTGGATATCGCACATGGCTTGAACGATCCCGACTCGCAGTTTCAGCTCTACAT
CGATATCGGGGCCAACCTGTGA

Upstream 100 bases:

>100_bases
TTAACAAAACGCCGACTGTAACCACTTCACTCGGCCCCCGTATAGTCGCGCTTGCCTAGATTTTTTGTCCCTTCACGCCG
AGGCTGGGTATCCTTTGACG

Downstream 100 bases:

>100_bases
GCGCACCTTCCCCTACGCCGCCGGCACCGCGTCCGCGCTTCTATCGCCGGCGCCGGTTCTGGGTGGGCTCGGGCCTGACC
GTGCTCGGGCTGGTGTTGCT

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 593; Mature: 593

Protein sequence:

>593_residues
MLKVAFALSLLCTLFVPLQAVARATIDKIEIKGLDGGDDAEMIENIQVSLSLYEAGGKEQGESRLEYLLAQAERQTREAL
EPFGYYSPTITLAAPRAGDRVTVVITVDRGEPVRVRTSHISITGWAEQDRYLGQDLKQFEPREGQVFSHPQYEASKVRIT
RRLAERGYFDADFTQRRVAITRAEHAADIDLNWDSGRRYDMGKVRFDYDYFRDGLFEPLVYWEEGSYYHEGKLDRLRESL
TKLDYFSTIDIQPKPEEADDQGRVPVDVKLTRAKRTVYTAGLSYGSESGAGVRGGVERRYVNSRGHKMDTQLDYAQNRKS
LTTSYRVPAFRWLDGWYTASARLYDEQTDYIDLRNVKFTGSRSGQINERWSAIASINALRERWRFSSGDDFEGAVYETST
LIYPQLQANYVNVDDRLFPRSGVSAQMFIRGGAEGAGSDTNFGQLYGQLRWFLGAGDNSRLILRGEGGTTWTSDLVAMPP
SLRFFAGGANSIRGYAFREVGPRTPKPDEFALGAKNVVTASAEYEHYLKGGPWGGAVFVDGGSAFDDRPDWHTGVGFGLR
WRSPVGPVRVDIAHGLNDPDSQFQLYIDIGANL

Sequences:

>Translated_593_residues
MLKVAFALSLLCTLFVPLQAVARATIDKIEIKGLDGGDDAEMIENIQVSLSLYEAGGKEQGESRLEYLLAQAERQTREAL
EPFGYYSPTITLAAPRAGDRVTVVITVDRGEPVRVRTSHISITGWAEQDRYLGQDLKQFEPREGQVFSHPQYEASKVRIT
RRLAERGYFDADFTQRRVAITRAEHAADIDLNWDSGRRYDMGKVRFDYDYFRDGLFEPLVYWEEGSYYHEGKLDRLRESL
TKLDYFSTIDIQPKPEEADDQGRVPVDVKLTRAKRTVYTAGLSYGSESGAGVRGGVERRYVNSRGHKMDTQLDYAQNRKS
LTTSYRVPAFRWLDGWYTASARLYDEQTDYIDLRNVKFTGSRSGQINERWSAIASINALRERWRFSSGDDFEGAVYETST
LIYPQLQANYVNVDDRLFPRSGVSAQMFIRGGAEGAGSDTNFGQLYGQLRWFLGAGDNSRLILRGEGGTTWTSDLVAMPP
SLRFFAGGANSIRGYAFREVGPRTPKPDEFALGAKNVVTASAEYEHYLKGGPWGGAVFVDGGSAFDDRPDWHTGVGFGLR
WRSPVGPVRVDIAHGLNDPDSQFQLYIDIGANL
>Mature_593_residues
MLKVAFALSLLCTLFVPLQAVARATIDKIEIKGLDGGDDAEMIENIQVSLSLYEAGGKEQGESRLEYLLAQAERQTREAL
EPFGYYSPTITLAAPRAGDRVTVVITVDRGEPVRVRTSHISITGWAEQDRYLGQDLKQFEPREGQVFSHPQYEASKVRIT
RRLAERGYFDADFTQRRVAITRAEHAADIDLNWDSGRRYDMGKVRFDYDYFRDGLFEPLVYWEEGSYYHEGKLDRLRESL
TKLDYFSTIDIQPKPEEADDQGRVPVDVKLTRAKRTVYTAGLSYGSESGAGVRGGVERRYVNSRGHKMDTQLDYAQNRKS
LTTSYRVPAFRWLDGWYTASARLYDEQTDYIDLRNVKFTGSRSGQINERWSAIASINALRERWRFSSGDDFEGAVYETST
LIYPQLQANYVNVDDRLFPRSGVSAQMFIRGGAEGAGSDTNFGQLYGQLRWFLGAGDNSRLILRGEGGTTWTSDLVAMPP
SLRFFAGGANSIRGYAFREVGPRTPKPDEFALGAKNVVTASAEYEHYLKGGPWGGAVFVDGGSAFDDRPDWHTGVGFGLR
WRSPVGPVRVDIAHGLNDPDSQFQLYIDIGANL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=593, Percent_Identity=30.5227655986509, Blast_Score=244, Evalue=2e-65,
Organism=Escherichia coli, GI1786374, Length=600, Percent_Identity=23.3333333333333, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 66630; Mature: 66630

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKVAFALSLLCTLFVPLQAVARATIDKIEIKGLDGGDDAEMIENIQVSLSLYEAGGKEQ
CEEHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHCCEEEEEEEEECCCCCC
GESRLEYLLAQAERQTREALEPFGYYSPTITLAAPRAGDRVTVVITVDRGEPVRVRTSHI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEEEE
SITGWAEQDRYLGQDLKQFEPREGQVFSHPQYEASKVRITRRLAERGYFDADFTQRRVAI
EEEECCHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEE
TRAEHAADIDLNWDSGRRYDMGKVRFDYDYFRDGLFEPLVYWEEGSYYHEGKLDRLRESL
EECCCCEEEEEECCCCCEECCCEEEECHHHHHCCCCCCEEEEECCCEEECCCHHHHHHHH
TKLDYFSTIDIQPKPEEADDQGRVPVDVKLTRAKRTVYTAGLSYGSESGAGVRGGVERRY
HHHHCEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHH
VNSRGHKMDTQLDYAQNRKSLTTSYRVPAFRWLDGWYTASARLYDEQTDYIDLRNVKFTG
HCCCCCCCCCCHHHHHCCHHCEEEECCCEEEEECCEEEECEEEECCCCCEEEEEEEEEEC
SRSGQINERWSAIASINALRERWRFSSGDDFEGAVYETSTLIYPQLQANYVNVDDRLFPR
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCEECCCCCCCCC
SGVSAQMFIRGGAEGAGSDTNFGQLYGQLRWFLGAGDNSRLILRGEGGTTWTSDLVAMPP
CCCCEEEEEECCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEECCCCCEECCCCEECCC
SLRFFAGGANSIRGYAFREVGPRTPKPDEFALGAKNVVTASAEYEHYLKGGPWGGAVFVD
CCEEEECCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCHHHHHCCCCCCCEEEEC
GGSAFDDRPDWHTGVGFGLRWRSPVGPVRVDIAHGLNDPDSQFQLYIDIGANL
CCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MLKVAFALSLLCTLFVPLQAVARATIDKIEIKGLDGGDDAEMIENIQVSLSLYEAGGKEQ
CEEHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHCCEEEEEEEEECCCCCC
GESRLEYLLAQAERQTREALEPFGYYSPTITLAAPRAGDRVTVVITVDRGEPVRVRTSHI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEEEE
SITGWAEQDRYLGQDLKQFEPREGQVFSHPQYEASKVRITRRLAERGYFDADFTQRRVAI
EEEECCHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEE
TRAEHAADIDLNWDSGRRYDMGKVRFDYDYFRDGLFEPLVYWEEGSYYHEGKLDRLRESL
EECCCCEEEEEECCCCCEECCCEEEECHHHHHCCCCCCEEEEECCCEEECCCHHHHHHHH
TKLDYFSTIDIQPKPEEADDQGRVPVDVKLTRAKRTVYTAGLSYGSESGAGVRGGVERRY
HHHHCEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHH
VNSRGHKMDTQLDYAQNRKSLTTSYRVPAFRWLDGWYTASARLYDEQTDYIDLRNVKFTG
HCCCCCCCCCCHHHHHCCHHCEEEECCCEEEEECCEEEECEEEECCCCCEEEEEEEEEEC
SRSGQINERWSAIASINALRERWRFSSGDDFEGAVYETSTLIYPQLQANYVNVDDRLFPR
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCEECCCCCCCCC
SGVSAQMFIRGGAEGAGSDTNFGQLYGQLRWFLGAGDNSRLILRGEGGTTWTSDLVAMPP
CCCCEEEEEECCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEECCCCCEECCCCEECCC
SLRFFAGGANSIRGYAFREVGPRTPKPDEFALGAKNVVTASAEYEHYLKGGPWGGAVFVD
CCEEEECCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCHHHHHCCCCCCCEEEEC
GGSAFDDRPDWHTGVGFGLRWRSPVGPVRVDIAHGLNDPDSQFQLYIDIGANL
CCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]