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The map label for this gene is xylB2 [H]

Identifier: 78049837

GI number: 78049837

Start: 4914297

End: 4915919

Strand: Reverse

Name: xylB2 [H]

Synonym: XCV4281

Alternate gene names: 78049837

Gene position: 4915919-4914297 (Counterclockwise)

Preceding gene: 78049842

Following gene: 78049833

Centisome position: 94.93

GC content: 65.87

Gene sequence:

>1623_bases
ATGGCAGACACGACACGGCGGGACTTGTTCAAGGGACTGGCTGCCGGCGCACTGGTCGCACCGCTGGCGGCCGCGGCCCA
GGCGTCGACGCCACAGTGCGCAGGTACGCCGCCGTGGGCGCGCGGTGTAGAGGGGCAGCGCAAGGCGGATCTGGGCAACG
GCACCTATCTCAATCCCATCGTGGCCGGCGATCACCCCGACCCCACCATCCTCAAGGATGGCGACGACTACTACATGACG
TTTTCGTCGTTCTTTTCCTACCCGGGCATCGTGCTGTGGCATTCCACCGATCTGGTCAACTGGACCCCGATCGGCCCGGC
GTTGCATCAGGGGCTGGGCACGATCTGGGCGCTGGACCTGTGCAAGCACAACGGTCGCTACTACATCTACATCCCGGCCA
ATCCGGACGACACCGGCTGGTCGATCTTCGTGATCTGGGCCGACGACATCCGCGGGCGGTGGAGCGCACCGATCGACCTG
AAGATCGCCGGCTGCATCGATCCCGGTCACGTGGTCGGCGAAGACGGCAAGCGCTATCTGTTCGTCAACGGCATCCGCAA
GGTACGCCTGCGCGATGACGGCCTGGCCACCGACGGACAGCTGGAACCGGCCTACGCGCCGTGGCGCTATCCCGACCACT
GGGTAGTGGAGAATTTCGCGCCCGAAGGCCCCAAGCTGACCTGGCACGATGGGTGGCTGTACCTGGTCACCGCCGTTGGC
GGCACTGCCGGGCCGGTGACCGGGCACATGGTCATTGCCGCGCGTTCGCGCTCGGTGCACGGGCCGTGGGAGCACTGCCC
GCGCAACCCGCTGGTGCGCACCCAATCGGACCAGGAGCCGTGGTGGTCGCGTGGGCATGCCACGCTGGTGGAAGGGCCGC
GCGGCGACTGGTGGATGGTCTATCACGGCTACGAAAACGGCTTTCGCACGCTGGGGCGGCAGACCTTGCTGGAGCCGATC
GAGTGGACGGCCGACGGCTGGTTTCGCGCCACTGGCGGCGATCTGTCCAAACCATTACGCACACCGGCACGCGTGCCTGC
CGCCGGCATGGCGCCGGCGACGGGGTTGGCGTTGTCCGACGATTTTTCCAGCGACAGGTTCGGCACCCAATGGAGCCTGC
ATGCGCCCAAGCCCGGCGAACAGGCGCGGGTGCGGCGCGCGAACAAGGCGCTGACGCTGGCCTGTGCGGGCAGCTCGCCG
ATCGACAGCACGCCACTGACCTGCGGCGTGCCCGATCGCGCCTACATGGCAGAGGTGACGCTGGAACTGGTCGGCAATGC
CGAAGGCGGCATTGTGTTGTTCTATAACCACAAGGCCTTCGTCGGCATCGGCTTCACCGCCGACAGCATGAAGACCTACG
AATATTCCGAAGAACTGGTCTGGGCGCGCGCACCCAACACGCATCGGCGCATTCGCGTGCGGCTGACCAACGATCACCAG
GTCGTAGGGTTCGAGTATTCGGTCGATGAGGGCCGGCAATGGACGCGCCACCCCACCCGCATGGAAGTCTCCGGATTCCA
TCACAACGTGTTCGGCGGTTTTCTCAGCCTGCAGCTTGGCGTGTATGCCGCGCAGCAAGGCGAGGTGGTATTGCGCGATT
TCCGCTATCGCGCGCTGAGCTGA

Upstream 100 bases:

>100_bases
TTTCGCAACTGGCATGACCAGTTCCTATAACGCCCGGCCTGCGGTTGCGGCATGAAGGCCGGTGCGGCTAGATACCTGCC
TTCTTCGACGAAGCTGACGC

Downstream 100 bases:

>100_bases
GCGCGCATCATGCCACCCAGCGTGACAGTCAAACGGCGAGGCCCGGGGGGACCTCGCCGTCAGGCGTAACAGCAACCATC
GAGGCCTTGCGCACAGCGTC

Product: xylosidase precursor

Products: NA

Alternate protein names: Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase; Alpha-N-arabinofuranosidase; Arabinosidase [H]

Number of amino acids: Translated: 540; Mature: 539

Protein sequence:

>540_residues
MADTTRRDLFKGLAAGALVAPLAAAAQASTPQCAGTPPWARGVEGQRKADLGNGTYLNPIVAGDHPDPTILKDGDDYYMT
FSSFFSYPGIVLWHSTDLVNWTPIGPALHQGLGTIWALDLCKHNGRYYIYIPANPDDTGWSIFVIWADDIRGRWSAPIDL
KIAGCIDPGHVVGEDGKRYLFVNGIRKVRLRDDGLATDGQLEPAYAPWRYPDHWVVENFAPEGPKLTWHDGWLYLVTAVG
GTAGPVTGHMVIAARSRSVHGPWEHCPRNPLVRTQSDQEPWWSRGHATLVEGPRGDWWMVYHGYENGFRTLGRQTLLEPI
EWTADGWFRATGGDLSKPLRTPARVPAAGMAPATGLALSDDFSSDRFGTQWSLHAPKPGEQARVRRANKALTLACAGSSP
IDSTPLTCGVPDRAYMAEVTLELVGNAEGGIVLFYNHKAFVGIGFTADSMKTYEYSEELVWARAPNTHRRIRVRLTNDHQ
VVGFEYSVDEGRQWTRHPTRMEVSGFHHNVFGGFLSLQLGVYAAQQGEVVLRDFRYRALS

Sequences:

>Translated_540_residues
MADTTRRDLFKGLAAGALVAPLAAAAQASTPQCAGTPPWARGVEGQRKADLGNGTYLNPIVAGDHPDPTILKDGDDYYMT
FSSFFSYPGIVLWHSTDLVNWTPIGPALHQGLGTIWALDLCKHNGRYYIYIPANPDDTGWSIFVIWADDIRGRWSAPIDL
KIAGCIDPGHVVGEDGKRYLFVNGIRKVRLRDDGLATDGQLEPAYAPWRYPDHWVVENFAPEGPKLTWHDGWLYLVTAVG
GTAGPVTGHMVIAARSRSVHGPWEHCPRNPLVRTQSDQEPWWSRGHATLVEGPRGDWWMVYHGYENGFRTLGRQTLLEPI
EWTADGWFRATGGDLSKPLRTPARVPAAGMAPATGLALSDDFSSDRFGTQWSLHAPKPGEQARVRRANKALTLACAGSSP
IDSTPLTCGVPDRAYMAEVTLELVGNAEGGIVLFYNHKAFVGIGFTADSMKTYEYSEELVWARAPNTHRRIRVRLTNDHQ
VVGFEYSVDEGRQWTRHPTRMEVSGFHHNVFGGFLSLQLGVYAAQQGEVVLRDFRYRALS
>Mature_539_residues
ADTTRRDLFKGLAAGALVAPLAAAAQASTPQCAGTPPWARGVEGQRKADLGNGTYLNPIVAGDHPDPTILKDGDDYYMTF
SSFFSYPGIVLWHSTDLVNWTPIGPALHQGLGTIWALDLCKHNGRYYIYIPANPDDTGWSIFVIWADDIRGRWSAPIDLK
IAGCIDPGHVVGEDGKRYLFVNGIRKVRLRDDGLATDGQLEPAYAPWRYPDHWVVENFAPEGPKLTWHDGWLYLVTAVGG
TAGPVTGHMVIAARSRSVHGPWEHCPRNPLVRTQSDQEPWWSRGHATLVEGPRGDWWMVYHGYENGFRTLGRQTLLEPIE
WTADGWFRATGGDLSKPLRTPARVPAAGMAPATGLALSDDFSSDRFGTQWSLHAPKPGEQARVRRANKALTLACAGSSPI
DSTPLTCGVPDRAYMAEVTLELVGNAEGGIVLFYNHKAFVGIGFTADSMKTYEYSEELVWARAPNTHRRIRVRLTNDHQV
VGFEYSVDEGRQWTRHPTRMEVSGFHHNVFGGFLSLQLGVYAAQQGEVVLRDFRYRALS

Specific function: Has a 1.6-fold higher activity as an arabinosidase than as a beta-xylosidase when tested on the substrates nitrophenyl- beta-D-xylopyranoside and P-nitrophenyl-alpha-L-arabinofuranoside [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=551, Percent_Identity=25.7713248638838, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37; =3.2.1.55 [H]

Molecular weight: Translated: 59761; Mature: 59630

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTTRRDLFKGLAAGALVAPLAAAAQASTPQCAGTPPWARGVEGQRKADLGNGTYLNPI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEECCE
VAGDHPDPTILKDGDDYYMTFSSFFSYPGIVLWHSTDLVNWTPIGPALHQGLGTIWALDL
EECCCCCCCEEECCCCEEEEHHHHHCCCCEEEEECCCCCEECCCCHHHHHHHHHHEEEEH
CKHNGRYYIYIPANPDDTGWSIFVIWADDIRGRWSAPIDLKIAGCIDPGHVVGEDGKRYL
HHCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCEECCCCCEEE
FVNGIRKVRLRDDGLATDGQLEPAYAPWRYPDHWVVENFAPEGPKLTWHDGWLYLVTAVG
EEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCEEEEEEECC
GTAGPVTGHMVIAARSRSVHGPWEHCPRNPLVRTQSDQEPWWSRGHATLVEGPRGDWWMV
CCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEE
YHGYENGFRTLGRQTLLEPIEWTADGWFRATGGDLSKPLRTPARVPAAGMAPATGLALSD
EECCCCHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECC
DFSSDRFGTQWSLHAPKPGEQARVRRANKALTLACAGSSPIDSTPLTCGVPDRAYMAEVT
CCCCCCCCCEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCHHHHEEE
LELVGNAEGGIVLFYNHKAFVGIGFTADSMKTYEYSEELVWARAPNTHRRIRVRLTNDHQ
EEEECCCCCCEEEEECCCEEEEEEEECCCCEEEECCCEEEEEECCCCCEEEEEEECCCCE
VVGFEYSVDEGRQWTRHPTRMEVSGFHHNVFGGFLSLQLGVYAAQQGEVVLRDFRYRALS
EEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHEEEEEEEEEECCCCEEEEEHHHHCCC
>Mature Secondary Structure 
ADTTRRDLFKGLAAGALVAPLAAAAQASTPQCAGTPPWARGVEGQRKADLGNGTYLNPI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEECCE
VAGDHPDPTILKDGDDYYMTFSSFFSYPGIVLWHSTDLVNWTPIGPALHQGLGTIWALDL
EECCCCCCCEEECCCCEEEEHHHHHCCCCEEEEECCCCCEECCCCHHHHHHHHHHEEEEH
CKHNGRYYIYIPANPDDTGWSIFVIWADDIRGRWSAPIDLKIAGCIDPGHVVGEDGKRYL
HHCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCEECCCCCEEE
FVNGIRKVRLRDDGLATDGQLEPAYAPWRYPDHWVVENFAPEGPKLTWHDGWLYLVTAVG
EEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCEEEEEEECC
GTAGPVTGHMVIAARSRSVHGPWEHCPRNPLVRTQSDQEPWWSRGHATLVEGPRGDWWMV
CCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEE
YHGYENGFRTLGRQTLLEPIEWTADGWFRATGGDLSKPLRTPARVPAAGMAPATGLALSD
EECCCCHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECC
DFSSDRFGTQWSLHAPKPGEQARVRRANKALTLACAGSSPIDSTPLTCGVPDRAYMAEVT
CCCCCCCCCEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCHHHHEEE
LELVGNAEGGIVLFYNHKAFVGIGFTADSMKTYEYSEELVWARAPNTHRRIRVRLTNDHQ
EEEECCCCCCEEEEECCCEEEEEEEECCCCEEEECCCEEEEEECCCCCEEEEEEECCCCE
VVGFEYSVDEGRQWTRHPTRMEVSGFHHNVFGGFLSLQLGVYAAQQGEVVLRDFRYRALS
EEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHEEEEEEEEEECCCCEEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1905520 [H]