Click here to switch to the map view.

The map label for this gene is gidB [H]

Identifier: 78049820

GI number: 78049820

Start: 4897780

End: 4898418

Strand: Reverse

Name: gidB [H]

Synonym: XCV4264

Alternate gene names: 78049820

Gene position: 4898418-4897780 (Counterclockwise)

Preceding gene: 78049823

Following gene: 78049819

Centisome position: 94.59

GC content: 70.74

Gene sequence:

>639_bases
ATGAACGATGCCGCACTCGCCCCCGATGTCTCTGCCGCGCTCGAACGCGGCCTGCAGGCCCAATCCCTGGATGCGGCCTT
CGCCGCACCGCTGCTGCGCTACCTGGCCCTGCTGGTGCGCTGGAACAAGACCTACAACCTGACCGCCGTGCGCGACCCGC
GCGAGATGGTCACCCGCCATCTGCTCGATTCGCTGGCCATGCAGCCCTACATCGCCAGCGGTACCCTGGCCGACCTGGGC
ACCGGCCCCGGCCTGCCCGGCATCCCGCTGGCGATCACCCGCCCGCAGCTGCAGGTGACGCTGGTGGAAAGCAATGGCAA
GAAGGCGCGCTTCATGCGCGAGGCCTTGCGCCATCTGGAGTTGGGCAACGCCCGCGTGGCCGAATCCCGTGCCGAAGCGC
TGGACGAGCCGGCCGCCTACGACCACCTCACCGCGCGCGCGCTGGACACGCTGGCCGGCATCATCGCCGTCGGCGGCCAC
CTGTTGCGCCCGGGCGGCAGCCTGTTGGCGATGAAGGGTGTGTACCCGCACGAGGAAATCGCCGCATTGCCGGCCGGCTG
GACCGTTGGCGAGGTGCACCCGCTGCAGGTCCCCGGCCTGGAGGGCGAGCGGCACCTGGTGGTGGTGCGCAAGGGCTGA

Upstream 100 bases:

>100_bases
GCGGCAGGGCAACGGCCTGCCGAGGCAACCACGCCATTCCCAGCCGCGATGCAAAGATCGGTGCGCGCATGCCCGCCAGC
CCAGCTGCGATAATCGCGCC

Downstream 100 bases:

>100_bases
GCCGAAGCCGCGTCGGCCGGTCTCAAGCGGCCCTCACCCCGACCCTCTCCCACAGGCGGGGGCGATACCGCACTCACCAA
GAGCGTCTCGTCCTTCCCTG

Product: 16S rRNA methyltransferase GidB

Products: NA

Alternate protein names: 16S rRNA 7-methylguanosine methyltransferase; 16S rRNA m7G methyltransferase [H]

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MNDAALAPDVSAALERGLQAQSLDAAFAAPLLRYLALLVRWNKTYNLTAVRDPREMVTRHLLDSLAMQPYIASGTLADLG
TGPGLPGIPLAITRPQLQVTLVESNGKKARFMREALRHLELGNARVAESRAEALDEPAAYDHLTARALDTLAGIIAVGGH
LLRPGGSLLAMKGVYPHEEIAALPAGWTVGEVHPLQVPGLEGERHLVVVRKG

Sequences:

>Translated_212_residues
MNDAALAPDVSAALERGLQAQSLDAAFAAPLLRYLALLVRWNKTYNLTAVRDPREMVTRHLLDSLAMQPYIASGTLADLG
TGPGLPGIPLAITRPQLQVTLVESNGKKARFMREALRHLELGNARVAESRAEALDEPAAYDHLTARALDTLAGIIAVGGH
LLRPGGSLLAMKGVYPHEEIAALPAGWTVGEVHPLQVPGLEGERHLVVVRKG
>Mature_212_residues
MNDAALAPDVSAALERGLQAQSLDAAFAAPLLRYLALLVRWNKTYNLTAVRDPREMVTRHLLDSLAMQPYIASGTLADLG
TGPGLPGIPLAITRPQLQVTLVESNGKKARFMREALRHLELGNARVAESRAEALDEPAAYDHLTARALDTLAGIIAVGGH
LLRPGGSLLAMKGVYPHEEIAALPAGWTVGEVHPLQVPGLEGERHLVVVRKG

Specific function: Specifically methylates the N7 position of guanosine in position 527 of 16S rRNA [H]

COG id: COG0357

COG function: function code M; Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA methyltransferase rsmG family [H]

Homologues:

Organism=Escherichia coli, GI1790179, Length=180, Percent_Identity=45.5555555555556, Blast_Score=172, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003682 [H]

Pfam domain/function: PF02527 GidB [H]

EC number: =2.1.1.170 [H]

Molecular weight: Translated: 22663; Mature: 22663

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDAALAPDVSAALERGLQAQSLDAAFAAPLLRYLALLVRWNKTYNLTAVRDPREMVTRH
CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
LLDSLAMQPYIASGTLADLGTGPGLPGIPLAITRPQLQVTLVESNGKKARFMREALRHLE
HHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
LGNARVAESRAEALDEPAAYDHLTARALDTLAGIIAVGGHLLRPGGSLLAMKGVYPHEEI
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEECCCCCHHHH
AALPAGWTVGEVHPLQVPGLEGERHLVVVRKG
HHCCCCCCCCCCCEEECCCCCCCCEEEEEECC
>Mature Secondary Structure
MNDAALAPDVSAALERGLQAQSLDAAFAAPLLRYLALLVRWNKTYNLTAVRDPREMVTRH
CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
LLDSLAMQPYIASGTLADLGTGPGLPGIPLAITRPQLQVTLVESNGKKARFMREALRHLE
HHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
LGNARVAESRAEALDEPAAYDHLTARALDTLAGIIAVGGHLLRPGGSLLAMKGVYPHEEI
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEECCCCCHHHH
AALPAGWTVGEVHPLQVPGLEGERHLVVVRKG
HHCCCCCCCCCCCEEECCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]