| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is ycbL [C]
Identifier: 78049653
GI number: 78049653
Start: 4694709
End: 4695731
Strand: Reverse
Name: ycbL [C]
Synonym: XCV4097
Alternate gene names: 78049653
Gene position: 4695731-4694709 (Counterclockwise)
Preceding gene: 78049654
Following gene: 78049652
Centisome position: 90.68
GC content: 65.59
Gene sequence:
>1023_bases GTGCCTGTGGCGACATGCGCGACCGCGACGCCAGGCTTGGGCCTACACTGCAGTTCCGACAGCCGCCGCGGGGTGCGAAT GACAGCGACAGCCGAGTTCAACATCCACACCATCGATACCGGCTTTGGCGGCGTGCAATTCGATGCGGCATATCTGGTGG TCCAAGCGCAGCAGGCCGCCTTGATCGATTGCGGTACCTCGCTGTCGGTCCCGCAGATGCTGGCCGCGGTGCAGGCGGCC GGCTTGGCGCCAGCGCAGGTGGAGTGGTTGATCCTGACCCATGTGCATCTGGATCATGCTGGCGGTGCAGGAGCCTTGTT GTGGCATTTGCCCAATGCGCAGGTGCTGGTGCATCCGCGCGGTGCACCGCACCTGATCGACCCTGCGCGGCTGATTGCCG GCGCCACCGCGGTGTATGGCGAGGCGGACATGGCGCGCCATTACGGCGTTATCGAGCCGGTGCCGGCCGAGCGTGTGGTC GCGGCCGGCGAGGGTCATACCGTGATGCTGGGCAAGCGCGCGCTGCGCACCGTCGAGACGCCTGGACATGCGCGCCATCA TCTATGCGTATGGGATGCGCGCAGCCGCAGCTGGTTCACCGGCGACACCTTCGGCCTGTCGTATCGCCAGTTGGACAGTG CGCGTGGCGCTTTCATCGTGCCGACGTCCTCGCCGGTGCAATTCGAACCCGAGGCCATGCTGCAGTCGATCGCGCGCCTG ATGGACGCCGCACCAGAGGCGATGTATCTGACCCATTACGGCCGTGTCACCTCGCCAGAACCGTTGGCGCGGGCGCTGGG CGAGCAGATTCATGCGATGACCGACATTGCGCTGGGCTGCGCGCAGCGTCCGGACCGGCATCGCTGCATGGTGGCGGCAT TGACCGAATTGTATCTGGAACGCGCACGCCAACATGGATGTCGGTTGGACGATGCCGCCGTGGAGCAACTGCTGGCAACG GACATCGAACTCAACGCGCAAGGGCTGGGCTGTTGGCTGGATCGTGCAGCGCGCATGCGTTAG
Upstream 100 bases:
>100_bases TGGATGCCGACGTGATTGTTGCCGCGATGGATGCCTTGCGCGAGGCGTGAGCTGCGCGGCGCAACAGGCGTCGAGGTGGG TTGTTGCGGTTGCGTAGGTC
Downstream 100 bases:
>100_bases CGCTGGTTGAGGGGTGACACACCCTCTCGAACGCTGTAGTGCGTGGTCGCGTCGTTCTGGTGCCGCTAAGGCCGGATCAG TCGGGTGCGCGGTGCCCTCA
Product: metallo-beta-lactamase superfamily protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Family Protein; Metallo-Beta-Lactamase Superfamily Protein; Zn-Dependent Hydrolase; Beta-Lactamase-Like; Beta-Lactamase Related Protein; Metallo-Beta-Lactamase Family Hydrolase; Metallo-Beta-Lactamase-Related Protein; Zn-Dependent Hydrolase Including Glyoxylase; Zn-Dependent Hydrolase Glyoxylase; Metallo-Beta-Lactamase; Hydroxyacylglutathione Hydrolase; Zinc-Dependant Hydrolase; Metallo-Beta-Lactamase Related Protein; Metallo Beta-Lactamase Protein; Metallo-Beta-Lactamase Domain Protein; Hydrolase; Zn-Dependent Hydrolases Including Glyoxylases
Number of amino acids: Translated: 340; Mature: 339
Protein sequence:
>340_residues MPVATCATATPGLGLHCSSDSRRGVRMTATAEFNIHTIDTGFGGVQFDAAYLVVQAQQAALIDCGTSLSVPQMLAAVQAA GLAPAQVEWLILTHVHLDHAGGAGALLWHLPNAQVLVHPRGAPHLIDPARLIAGATAVYGEADMARHYGVIEPVPAERVV AAGEGHTVMLGKRALRTVETPGHARHHLCVWDARSRSWFTGDTFGLSYRQLDSARGAFIVPTSSPVQFEPEAMLQSIARL MDAAPEAMYLTHYGRVTSPEPLARALGEQIHAMTDIALGCAQRPDRHRCMVAALTELYLERARQHGCRLDDAAVEQLLAT DIELNAQGLGCWLDRAARMR
Sequences:
>Translated_340_residues MPVATCATATPGLGLHCSSDSRRGVRMTATAEFNIHTIDTGFGGVQFDAAYLVVQAQQAALIDCGTSLSVPQMLAAVQAA GLAPAQVEWLILTHVHLDHAGGAGALLWHLPNAQVLVHPRGAPHLIDPARLIAGATAVYGEADMARHYGVIEPVPAERVV AAGEGHTVMLGKRALRTVETPGHARHHLCVWDARSRSWFTGDTFGLSYRQLDSARGAFIVPTSSPVQFEPEAMLQSIARL MDAAPEAMYLTHYGRVTSPEPLARALGEQIHAMTDIALGCAQRPDRHRCMVAALTELYLERARQHGCRLDDAAVEQLLAT DIELNAQGLGCWLDRAARMR >Mature_339_residues PVATCATATPGLGLHCSSDSRRGVRMTATAEFNIHTIDTGFGGVQFDAAYLVVQAQQAALIDCGTSLSVPQMLAAVQAAG LAPAQVEWLILTHVHLDHAGGAGALLWHLPNAQVLVHPRGAPHLIDPARLIAGATAVYGEADMARHYGVIEPVPAERVVA AGEGHTVMLGKRALRTVETPGHARHHLCVWDARSRSWFTGDTFGLSYRQLDSARGAFIVPTSSPVQFEPEAMLQSIARLM DAAPEAMYLTHYGRVTSPEPLARALGEQIHAMTDIALGCAQRPDRHRCMVAALTELYLERARQHGCRLDDAAVEQLLATD IELNAQGLGCWLDRAARMR
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36575; Mature: 36444
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: PS00626 RCC1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVATCATATPGLGLHCSSDSRRGVRMTATAEFNIHTIDTGFGGVQFDAAYLVVQAQQAA CCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEECEEEEEEEECCCE LIDCGTSLSVPQMLAAVQAAGLAPAQVEWLILTHVHLDHAGGAGALLWHLPNAQVLVHPR EEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEECC GAPHLIDPARLIAGATAVYGEADMARHYGVIEPVPAERVVAAGEGHTVMLGKRALRTVET CCCCCCCHHHHHHCCHHHCCCHHHHHHCCCCCCCCHHHEEECCCCCEEEECHHHHHHCCC PGHARHHLCVWDARSRSWFTGDTFGLSYRQLDSARGAFIVPTSSPVQFEPEAMLQSIARL CCCCCCEEEEEECCCCCEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH MDAAPEAMYLTHYGRVTSPEPLARALGEQIHAMTDIALGCAQRPDRHRCMVAALTELYLE HHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH RARQHGCRLDDAAVEQLLATDIELNAQGLGCWLDRAARMR HHHHCCCCCCHHHHHHHHHHCCEECCCCCHHHHHHHHCCC >Mature Secondary Structure PVATCATATPGLGLHCSSDSRRGVRMTATAEFNIHTIDTGFGGVQFDAAYLVVQAQQAA CCCCCCCCCCCCEEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEECEEEEEEEECCCE LIDCGTSLSVPQMLAAVQAAGLAPAQVEWLILTHVHLDHAGGAGALLWHLPNAQVLVHPR EEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEECC GAPHLIDPARLIAGATAVYGEADMARHYGVIEPVPAERVVAAGEGHTVMLGKRALRTVET CCCCCCCHHHHHHCCHHHCCCHHHHHHCCCCCCCCHHHEEECCCCCEEEECHHHHHHCCC PGHARHHLCVWDARSRSWFTGDTFGLSYRQLDSARGAFIVPTSSPVQFEPEAMLQSIARL CCCCCCEEEEEECCCCCEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH MDAAPEAMYLTHYGRVTSPEPLARALGEQIHAMTDIALGCAQRPDRHRCMVAALTELYLE HHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH RARQHGCRLDDAAVEQLLATDIELNAQGLGCWLDRAARMR HHHHCCCCCCHHHHHHHHHHCCEECCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA