Click here to switch to the map view.

The map label for this gene is ampD [H]

Identifier: 78049534

GI number: 78049534

Start: 4567302

End: 4568108

Strand: Reverse

Name: ampD [H]

Synonym: XCV3978

Alternate gene names: 78049534

Gene position: 4568108-4567302 (Counterclockwise)

Preceding gene: 78049542

Following gene: 78049533

Centisome position: 88.21

GC content: 66.91

Gene sequence:

>807_bases
GTGCTGCCCAGCTTTTCTCTCTCGTCATCGGCCTGGCTGCGTGCAGCTGTTTGCCTGGCCGCTCTGTCGCTGGGCGCCTG
TGCCCACGCACCGCAGCGCAATCCGCTGGCGCAGTGGGTGCCATCGCCCAACTACGACACGCGGCGACCGATCCTGATCG
TGTTGCATTTCACCGACCAGCAGTCAGTCCGGCAAAGCCTGAGTACCCTGCGCGGCCGCAACAGTGGCGGGCGCGTCAGT
GCGCACTACCTGATCGGCGAAGACGGCCAGCGCTACCAATTGGTAAGCGATGGGCAGCGCGCCTGGCACGGCGGGGCCGG
GCGCTGGGGCACCATCACCGACATCAATTCGGCCTCGATCGGCATCGAACTGGACAACGACGGTAGCGAGCCATTCGCGC
CGGCGCAGATCGACAGCCTGCTGGTGTTGCTGGACGATCTGTGTCAGCGCCTGCGTATCCCGCGTACGCAGATCGTCGGC
CATGAAGACGTGGCCCCGACGCGCAAGAACGACCCCGGACCGTTGTTCCCCTGGAAGCGCCTGGCCGACGCCGGTTTCGG
CCGCTGGCCCGCTGCCGACGCGCCCGCAGCCCCGGAAGGTTTCGACCCGTGGCAGGCGCTTGCCCTGATCGGCTACAGCA
TCGACGATCCGGCCGCCACCCTGCAGGCGTTTCACCACCACTATCGCGGCAACAGCGCCACCACCCTGGATGCCGAAGAC
CTGCGCATCTTGTCTGCGTTGACCCACCACGCGAGACCTTCCAGCCCGCGACCGGCGCTTGAGCCAACTGAAGGCGACGA
CCACTAG

Upstream 100 bases:

>100_bases
GCACCGCGCTGCCGACGGTCCCATCGGCAGACGGCCGCGCAAGCACGACTCGGCCGATAATGGTGCTGCGCAGGTCGTCC
GGCCTTCCCAGGAGTAATCC

Downstream 100 bases:

>100_bases
GCCCACAGGGATCGCGCCACGCTGTAGCCGGTGGCGAAAGACGCGCGGCTTGATCTACCGCGCAAATGCGGCCTCTTGCA
AGGGAACCGAAATGACCGAC

Product: N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MLPSFSLSSSAWLRAAVCLAALSLGACAHAPQRNPLAQWVPSPNYDTRRPILIVLHFTDQQSVRQSLSTLRGRNSGGRVS
AHYLIGEDGQRYQLVSDGQRAWHGGAGRWGTITDINSASIGIELDNDGSEPFAPAQIDSLLVLLDDLCQRLRIPRTQIVG
HEDVAPTRKNDPGPLFPWKRLADAGFGRWPAADAPAAPEGFDPWQALALIGYSIDDPAATLQAFHHHYRGNSATTLDAED
LRILSALTHHARPSSPRPALEPTEGDDH

Sequences:

>Translated_268_residues
MLPSFSLSSSAWLRAAVCLAALSLGACAHAPQRNPLAQWVPSPNYDTRRPILIVLHFTDQQSVRQSLSTLRGRNSGGRVS
AHYLIGEDGQRYQLVSDGQRAWHGGAGRWGTITDINSASIGIELDNDGSEPFAPAQIDSLLVLLDDLCQRLRIPRTQIVG
HEDVAPTRKNDPGPLFPWKRLADAGFGRWPAADAPAAPEGFDPWQALALIGYSIDDPAATLQAFHHHYRGNSATTLDAED
LRILSALTHHARPSSPRPALEPTEGDDH
>Mature_268_residues
MLPSFSLSSSAWLRAAVCLAALSLGACAHAPQRNPLAQWVPSPNYDTRRPILIVLHFTDQQSVRQSLSTLRGRNSGGRVS
AHYLIGEDGQRYQLVSDGQRAWHGGAGRWGTITDINSASIGIELDNDGSEPFAPAQIDSLLVLLDDLCQRLRIPRTQIVG
HEDVAPTRKNDPGPLFPWKRLADAGFGRWPAADAPAAPEGFDPWQALALIGYSIDDPAATLQAFHHHYRGNSATTLDAED
LRILSALTHHARPSSPRPALEPTEGDDH

Specific function: Unknown

COG id: COG3023

COG function: function code V; Negative regulator of beta-lactamase expression

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787092, Length=232, Percent_Identity=35.7758620689655, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786300, Length=166, Percent_Identity=33.1325301204819, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002502
- InterPro:   IPR002477 [H]

Pfam domain/function: PF01510 Amidase_2 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 29135; Mature: 29135

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPSFSLSSSAWLRAAVCLAALSLGACAHAPQRNPLAQWVPSPNYDTRRPILIVLHFTDQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEEECCH
QSVRQSLSTLRGRNSGGRVSAHYLIGEDGQRYQLVSDGQRAWHGGAGRWGTITDINSASI
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCCHHHCCCCCCCCCEEECCCCEE
GIELDNDGSEPFAPAQIDSLLVLLDDLCQRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKR
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCHHH
LADAGFGRWPAADAPAAPEGFDPWQALALIGYSIDDPAATLQAFHHHYRGNSATTLDAED
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEECHHH
LRILSALTHHARPSSPRPALEPTEGDDH
HHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLPSFSLSSSAWLRAAVCLAALSLGACAHAPQRNPLAQWVPSPNYDTRRPILIVLHFTDQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEEECCH
QSVRQSLSTLRGRNSGGRVSAHYLIGEDGQRYQLVSDGQRAWHGGAGRWGTITDINSASI
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCCHHHCCCCCCCCCEEECCCCEE
GIELDNDGSEPFAPAQIDSLLVLLDDLCQRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKR
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCHHH
LADAGFGRWPAADAPAAPEGFDPWQALALIGYSIDDPAATLQAFHHHYRGNSATTLDAED
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEECHHH
LRILSALTHHARPSSPRPALEPTEGDDH
HHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]