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The map label for this gene is ygaU [H]

Identifier: 78049518

GI number: 78049518

Start: 4549242

End: 4549628

Strand: Reverse

Name: ygaU [H]

Synonym: XCV3962

Alternate gene names: 78049518

Gene position: 4549628-4549242 (Counterclockwise)

Preceding gene: 78049519

Following gene: 78049517

Centisome position: 87.86

GC content: 59.43

Gene sequence:

>387_bases
ATGCGGGATCGCGCGGGCTTCACGGCGGCGCGATCCACGCTTAACAGCGCCCCGCGCACCCTGCTGACACCGCGATGCAC
AGGGATTGCAGCAATGAGTGTCGACAAGAAAGCAGATTTCTCCAACGTCACCTCATCGGTCGATAGCACCGCTGAAGTGA
CGCCTGCGCCGGATTTTTCCAACGTGCGCACCAGTGTGCAAAGCACCGCGCAGCTTGTTGAAGAATCGGTCACCGTCCAG
GCCGGCGACAGCCTCTCCAGTATTACCAAGCGCCATCTGGGCGACGGCAATCTGTGGCCACGTATTTTCGAAGCCAATCG
CGAAACGCTGCAGGATCCGGACAAGATCTTTCCCGGGCAGGTACTGCGCTTGCCTGCAAAGTCGTAA

Upstream 100 bases:

>100_bases
CACACGTCGTGGCGGCCTGGACATCAACCCGCTGCGCAGTTCGGCCAGCGTGCCGACGCCGCTGTCGATCTTCCGCGACC
TGCGCCAATAGATCGCGCTC

Downstream 100 bases:

>100_bases
TCGCAGGTCGGCGTCCAGTCTCGCTGGCGGCGGCACGATTCAACACACCTAGACACCCACTCGAGCACTGCGACTGCAGA
TGTTCTGCTACCGGAGAATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MRDRAGFTAARSTLNSAPRTLLTPRCTGIAAMSVDKKADFSNVTSSVDSTAEVTPAPDFSNVRTSVQSTAQLVEESVTVQ
AGDSLSSITKRHLGDGNLWPRIFEANRETLQDPDKIFPGQVLRLPAKS

Sequences:

>Translated_128_residues
MRDRAGFTAARSTLNSAPRTLLTPRCTGIAAMSVDKKADFSNVTSSVDSTAEVTPAPDFSNVRTSVQSTAQLVEESVTVQ
AGDSLSSITKRHLGDGNLWPRIFEANRETLQDPDKIFPGQVLRLPAKS
>Mature_128_residues
MRDRAGFTAARSTLNSAPRTLLTPRCTGIAAMSVDKKADFSNVTSSVDSTAEVTPAPDFSNVRTSVQSTAQLVEESVTVQ
AGDSLSSITKRHLGDGNLWPRIFEANRETLQDPDKIFPGQVLRLPAKS

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=64, Percent_Identity=50, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 13778; Mature: 13778

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDRAGFTAARSTLNSAPRTLLTPRCTGIAAMSVDKKADFSNVTSSVDSTAEVTPAPDFS
CCCCCHHHHHHHHHHHCCCHHCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCHH
NVRTSVQSTAQLVEESVTVQAGDSLSSITKRHLGDGNLWPRIFEANRETLQDPDKIFPGQ
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHCCHHHHCCCCCCCCCC
VLRLPAKS
EEECCCCC
>Mature Secondary Structure
MRDRAGFTAARSTLNSAPRTLLTPRCTGIAAMSVDKKADFSNVTSSVDSTAEVTPAPDFS
CCCCCHHHHHHHHHHHCCCHHCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCHH
NVRTSVQSTAQLVEESVTVQAGDSLSSITKRHLGDGNLWPRIFEANRETLQDPDKIFPGQ
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHCCHHHHCCCCCCCCCC
VLRLPAKS
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]