| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is icd [H]
Identifier: 78049516
GI number: 78049516
Start: 4545990
End: 4548221
Strand: Reverse
Name: icd [H]
Synonym: XCV3960
Alternate gene names: 78049516
Gene position: 4548221-4545990 (Counterclockwise)
Preceding gene: 78049517
Following gene: 78049515
Centisome position: 87.83
GC content: 62.77
Gene sequence:
>2232_bases ATGTCGAAGACACCGAAGATCCTGTACACGCTCACCGACGAAGCACCCTACCTGGCCACGCAGTCGCTGCTGCCGATCAT CGATGCCTACACCGATACTGCCGGCATCGTGGTCGAAACGCGCGACATCTCGCTGGCCGGCCGCATTCTGGCGCTGTTTC CCGAGCATTTGAGCGGCACGCAGAAGATCGCCGACGACCTGGCCGAACTGGGTGAGCTGGCCACCACGCCGGAAGCCAAC ATCATCAAGCTGCCCAACATCAGCGCCTCGGTGCCGCAGCTCAAGGCCGCGATCAAGGAACTGCAGGGCCAGGGCTATGC ATTGCCGGCGTATCCGGATGAACCCAAGGATGCCGCGGAAAAAGACATCAAGGCGCGCTACGACAAGGTCAAGGGCAGCG CGGTGAATCCGGTGCTGCGCGAGGGCAATTCCGATCGTCGTGCACCGCTGTCGGTAAAAAACTATGCGCGCAAGCATCCG CACCGCATGGGCAAGTGGAGCAGCGATTCCAAGTCGCACGTGTCGCACATGGAGTCTGGCGATTTCTTCGGTAGCGAACA GTCCACCACGCTGGCCGAGGCCGGCACGCTGAAGATCGAATTCGTAGGCAACGATGGCAGCAGCACCGTGCTGAAAGACA AGGTGGCGGTGAAGGCGGGCGAAATCGTCGACGCTGCCGTATTGAGCAAGCGTGCGCTGGCCAGCTTCATCGACGCGCAG ATTGCCGATGCCAAGGCCCGCGACGTGCTGTTCTCGGTGCATCTGAAAGCCACCATGATGAAGGTCTCCGACCCGGTGCT GTTCGGCGTGGTGGTCGGCGAGTTCTACAAGGACACGCTGAGCAAGCATGCCGATGCGCTCAAGTCGGTCGGCTTCGATC CCAACAACGGCATCGGCGATCTGTACGCACGTATCACGTCGCTGCCGGAAGCGAAGCAAACCGAAATCAAGGACGATATC CAGGCCGAATACGCGCAGCGCCCGGGCCTGGCGATGGTCAATTCGGATAAGGGCATCACCAACCTGCATGTGCCCAGCGA CGTGATCGTCGATGCTTCCATGCCGGCGATGATTCGCGACTCCGGCCAGATGTGGAATGCCCAAGGCAAGCTGCAGGACA CCAAGGCGGTGATTCCGGACCGCTGCTATGCCGGCGTGTACCAGGCGGTGATCGACGACTGCAAGGTGCATGGTGCGTTC GATCCGGCCACGATGGGTTCGGTGCCCAACGTGGGGCTGATGGCGCAGAAGGCCGAAGAATACGGCTCGCACGACAAGAC CTTCCAGATGGCCGCTGCCGGCACCGTCAAGGTCACCGATGGCAACGGCAAGACGGTGTTCGAGCACGCCGTGGAAGCCG GCGATCTGTGGCGCATGTGCCAGGTCAAGGACGCGCCGATCCAGGACTGGGTGAAGCTGGCCGTGGAGCGCGCCCGCCTG AGCGAGACGCCGGCCGTGTTCTGGCTGGACAAGGCGCGTGCACACGATGCGCAGGTGATCGCCAAGGTCGAGCAGTATCT GAAGGATCACGACACCAACGGCCTGGATATCCGCATCCTGCCGCCGGTGGAAGCGACCACGTTCTCGCTGGAGCGCATCC GCAAGGGCCAGGACACCATCTCGGTCACCGGCAACGTGCTGCGCGACTACCTCACCGATTTGTTCCCGATCATGGAGCTC GGCACCAGCGCCAAGATGCTCTCCATCGTGCCGCTGATGGCCGGTGGCGGTTTGTTCGAAACCGGTGCCGGTGGTTCGGC GCCCAAGCATGTGCAGCAGTTCGTCGAAGAGAACTGCCTGCGCTGGGATTCGCTGGGTGAATTCCTGGCCCTGGCCGCGT CGCTCGAGCATCTGGGCAACCGTTACGACAATCCGTCGGCCACGGTGCTGGCCAAGGCGCTGGATGTCGCCAATGGACAG TTCCTGGACAACAACAAGTCGCCCGCGCGCAAGGTCGGCGAGCTCGACAACCGCGGCAGCCACTTCTATCTGGCCATGTA CTGGGCGCAGGCCCTGGCCGCGCAGACCGAAGACACGGCATTGCAGGCCAAGTTCGCGCCGCTGGCCAAGGCCCTGACCG AGAACGAAGCCACCATCGTGGGCGAACTCAACGGCGCGCAGGGCAGGCCGGTGGAAATTGGCGGTTACTACCATCCTGAC CTGGCCAAGGTCAGCGAGGCGATGCGGCCGAGCAAGACCTTCAACGACATCCTGGCCACGCTGAAGGCCTGA
Upstream 100 bases:
>100_bases CGCTGGTTAACCGGTGTGCATCAACGACCCCGTCGCGCGCACCACTGCCATCGTCCGTGAATGCCGGCGCTCCTCCCGAC CACAAGAGCCATCGCACCTC
Downstream 100 bases:
>100_bases GTCGCCGCACCGCCTGCGGTCTCCGCATGGCGTGTTCAAGGCCCGTCTCGCAAGAGGCGGGCCTTGTCGTTTCAGCGAAA CGGCGACAATGCCGTCACGC
Product: isocitrate dehydrogenase
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 743; Mature: 742
Protein sequence:
>743_residues MSKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSGTQKIADDLAELGELATTPEAN IIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHP HRMGKWSSDSKSHVSHMESGDFFGSEQSTTLAEAGTLKIEFVGNDGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGDLYARITSLPEAKQTEIKDDI QAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGKLQDTKAVIPDRCYAGVYQAVIDDCKVHGAF DPATMGSVPNVGLMAQKAEEYGSHDKTFQMAAAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL SETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQ FLDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDTALQAKFAPLAKALTENEATIVGELNGAQGRPVEIGGYYHPD LAKVSEAMRPSKTFNDILATLKA
Sequences:
>Translated_743_residues MSKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSGTQKIADDLAELGELATTPEAN IIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHP HRMGKWSSDSKSHVSHMESGDFFGSEQSTTLAEAGTLKIEFVGNDGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGDLYARITSLPEAKQTEIKDDI QAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGKLQDTKAVIPDRCYAGVYQAVIDDCKVHGAF DPATMGSVPNVGLMAQKAEEYGSHDKTFQMAAAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL SETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQ FLDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDTALQAKFAPLAKALTENEATIVGELNGAQGRPVEIGGYYHPD LAKVSEAMRPSKTFNDILATLKA >Mature_742_residues SKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSGTQKIADDLAELGELATTPEANI IKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHPH RMGKWSSDSKSHVSHMESGDFFGSEQSTTLAEAGTLKIEFVGNDGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQI ADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGDLYARITSLPEAKQTEIKDDIQ AEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGKLQDTKAVIPDRCYAGVYQAVIDDCKVHGAFD PATMGSVPNVGLMAQKAEEYGSHDKTFQMAAAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARLS ETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTISVTGNVLRDYLTDLFPIMELG TSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQF LDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDTALQAKFAPLAKALTENEATIVGELNGAQGRPVEIGGYYHPDL AKVSEAMRPSKTFNDILATLKA
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80365; Mature: 80234
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSGT CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCHHCCHH QKIADDLAELGELATTPEANIIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAE HHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHH KDIKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHRMGKWSSDSKSHVSHMESG HHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCHHHHHHCCCC DFFGSEQSTTLAEAGTLKIEFVGNDGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ CCCCCCCCCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGD HHCCHHHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LYARITSLPEAKQTEIKDDIQAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRD HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCEEECCCCCHHHHC SGQMWNAQGKLQDTKAVIPDRCYAGVYQAVIDDCKVHGAFDPATMGSVPNVGLMAQKAEE CCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH YGSHDKTFQMAAAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL HCCCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTI CCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH RWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQFLDNNKSPARKVGELDNRGS CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHCCCCCCC HFYLAMYWAQALAAQTEDTALQAKFAPLAKALTENEATIVGELNGAQGRPVEIGGYYHPD EEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCEECCC LAKVSEAMRPSKTFNDILATLKA HHHHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure SKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSGT CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCHHCCHH QKIADDLAELGELATTPEANIIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAE HHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHH KDIKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHRMGKWSSDSKSHVSHMESG HHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCHHHHHHCCCC DFFGSEQSTTLAEAGTLKIEFVGNDGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ CCCCCCCCCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGD HHCCHHHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LYARITSLPEAKQTEIKDDIQAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRD HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCEEECCCCCHHHHC SGQMWNAQGKLQDTKAVIPDRCYAGVYQAVIDDCKVHGAFDPATMGSVPNVGLMAQKAEE CCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH YGSHDKTFQMAAAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL HCCCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTI CCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH RWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQFLDNNKSPARKVGELDNRGS CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHCCCCCCC HFYLAMYWAQALAAQTEDTALQAKFAPLAKALTENEATIVGELNGAQGRPVEIGGYYHPD EEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCEECCC LAKVSEAMRPSKTFNDILATLKA HHHHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]