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The map label for this gene is 78049381

Identifier: 78049381

GI number: 78049381

Start: 4408787

End: 4410223

Strand: Reverse

Name: 78049381

Synonym: XCV3825

Alternate gene names: NA

Gene position: 4410223-4408787 (Counterclockwise)

Preceding gene: 78049382

Following gene: 78049379

Centisome position: 85.16

GC content: 65.76

Gene sequence:

>1437_bases
ATGTTCAGCGCTGAGGTGGAGCCGCCATGGAGTTTTGAGGCATGGCGCGCGTTGGCGCGGGCGGGCTGGTGCGCGCAGGT
GGAGCCGGACGATGTGGCCTGGAATGGCGGGGCGCAGGGCGGCTTGTTGATGGGGCAGGGCCTGTTGGCGTTGCCGGCTG
TGGTGCCACCACCACGGGTCTCTGCAGATTTCATGCAGCTGGCGGCCTCGGTGCTGTGTCACCGCGACCCGCAACGGCAT
GCCGTGTTGTATCGCTTGCTGTGGCGCGTTGCCTCTGGCGAAAAAGCCTTGCTGGAACGCGCCACCGATGTGGATGTACA
CCGGCTACGGCAGTGGCAAAAAGCGGTGCAGCGCGATACGCACAAGATGAAGGCCTTCGTGCGCTTTCGCCGCCTGCCCG
GGGAAGAAGAAGACTTCGTGTCCTGGTTCGAGCCCGAGCACTGGATCGTGGATCGCGTGGCGCCGTTTTTTGCGCGCCGG
TTTGCCGGCATGCGCTGGGCGATCCTGACCCCGTACCGCAGCGTGCGTTGGGATGGGCAGGCGTTGGCCTTTGGCGAAGG
CGCGGTGCGCACCCAGGTCCCGGCCGACGATGCGCAGGAGACGCTCTGGCGCACGTACTACGCGCACATCTTCAACCCGG
CGCGGCTCAACCCGACCATGATGCGGCAGGAAATGCCGCAGAAATATTGGAAGAACCTGCCCGAAGCCACGCTGTTGCCG
GAGCTGATCCGCGAAGCCGGCGTGCGCGTGCGCGAGATGGCCGAGCGCGCGCCCGAGCCGGTACGGCGACGGGTGCCGGC
GGCGCCTGCGCCACTGCCGGACGTGGTCACCCAAAGCCTGGCCCAGTTGCGCACTGCCGCACGCGATTGCCGGCGTTGCG
AGCTGTGGCAACCAGCAACGCAAACAGTGTTCGGCGAAGGGCCCGACGATGCGTCGGTGATGGTGATCGGCGAGCAGCCT
GGCGATGAAGAGGACTTGAGCGGTCGTCCGTTTGTCGGGCCTGCCGGGCGCCTGTTCAACATGGCATTGGGCGAGCTGGG
TGTGGACCGAGAGAAGTTTTACGTCACCAATGCGGTCAAGCATTTCCGTTTCGAGCAGCGCGGCAAACGGCGGCTGCATC
GCAATCCCGAGCGCACCCATGTACAGGCCTGTAGCGGGTGGTTGCAGGCCGAACGGGCGCAATTGCGTCCGGCCCAGATC
GTCTGCCTGGGCGCGACTGCGGCGCAAGCGGTGTTGGGAAGCAGCTTCCGATTGATGCGCGAGCGCGGGCAATGGCAACG
CCTGGACGACGGCACGCCGGTGTTGACCACGGTGCATCCGTCCTGGGTGTTGCGCCAGCCATCGACCGATGCGCGCGAAG
AAGGGTATCGCGGATTTGTCGAAGATCTCCGTCGATTGCTGGATCCACCGCCGCCGTCCAGCGATCAGTCGAGATAG

Upstream 100 bases:

>100_bases
GGCCACGGCCATAGCAATAGCAATAGCAATAGCAATAGCAGCGGCGATAGGGTCTTGGTGTTGATGGTGGCGTTAGTCTC
TGGGGAGTGCGGTGTGAGCG

Downstream 100 bases:

>100_bases
GGAAACCGCGCGTCGCACGGGCAAAAAAATACGCGTGCAAGGGCACGCGCACGGTGTCGGAGAATCAGGACACCAAGCGG
AGCCACCGGCACGCCGGTCA

Product: uracil DNA glycosylase superfamily protein

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; DNA Polymerase Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Phage SPO1 DNA Polymerase-Like Protein; Uracil DNA Glycosylase Superfamily Protein; Uracil-DNA Glycosylase Superfamily; DNA Polymerase; DNA Polymerase Bacteriophage-Type; DNA-Directed DNA Polymerase Protein; DNA Polymerase-Related Protein Bacteriophage-Type; Uracil-DNA Glycosylase Family 4 Protein; Phage Spo1 DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase; Helicase/Glycosylase; Phage SPO1 DNA Polymerase Domain-Containing Protein; Phage Related DNA Polymerase; DNA Glycosylase; Phage SpO1 DNA Polymerase-Related Protein; Uracil DNA Glycosylase Protein; Bacteriophage-Related DNA Polymerase; Bacteriophage-Type DNA Polymerase; Uracil DNA Glycosylase; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily; Phage Shock Protein E; Phage DNA Polymerase; Phage SPO1 DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; DNA Polymerase-Related Protein; Uracil-DNA Glycosylase-Like Protein; Uracil DNA Glycosylase Family Protein; Transcriptional Regulator Fis Family; Uracil-DNA Glycosylase-Related Protein; N-Terminus Of Phage SPO1 DNA Polymerase; Fis Family Transcriptional Regulator; DNA Polymerase-Like Protein; Leucyl-TRNA Synthetase

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MFSAEVEPPWSFEAWRALARAGWCAQVEPDDVAWNGGAQGGLLMGQGLLALPAVVPPPRVSADFMQLAASVLCHRDPQRH
AVLYRLLWRVASGEKALLERATDVDVHRLRQWQKAVQRDTHKMKAFVRFRRLPGEEEDFVSWFEPEHWIVDRVAPFFARR
FAGMRWAILTPYRSVRWDGQALAFGEGAVRTQVPADDAQETLWRTYYAHIFNPARLNPTMMRQEMPQKYWKNLPEATLLP
ELIREAGVRVREMAERAPEPVRRRVPAAPAPLPDVVTQSLAQLRTAARDCRRCELWQPATQTVFGEGPDDASVMVIGEQP
GDEEDLSGRPFVGPAGRLFNMALGELGVDREKFYVTNAVKHFRFEQRGKRRLHRNPERTHVQACSGWLQAERAQLRPAQI
VCLGATAAQAVLGSSFRLMRERGQWQRLDDGTPVLTTVHPSWVLRQPSTDAREEGYRGFVEDLRRLLDPPPPSSDQSR

Sequences:

>Translated_478_residues
MFSAEVEPPWSFEAWRALARAGWCAQVEPDDVAWNGGAQGGLLMGQGLLALPAVVPPPRVSADFMQLAASVLCHRDPQRH
AVLYRLLWRVASGEKALLERATDVDVHRLRQWQKAVQRDTHKMKAFVRFRRLPGEEEDFVSWFEPEHWIVDRVAPFFARR
FAGMRWAILTPYRSVRWDGQALAFGEGAVRTQVPADDAQETLWRTYYAHIFNPARLNPTMMRQEMPQKYWKNLPEATLLP
ELIREAGVRVREMAERAPEPVRRRVPAAPAPLPDVVTQSLAQLRTAARDCRRCELWQPATQTVFGEGPDDASVMVIGEQP
GDEEDLSGRPFVGPAGRLFNMALGELGVDREKFYVTNAVKHFRFEQRGKRRLHRNPERTHVQACSGWLQAERAQLRPAQI
VCLGATAAQAVLGSSFRLMRERGQWQRLDDGTPVLTTVHPSWVLRQPSTDAREEGYRGFVEDLRRLLDPPPPSSDQSR
>Mature_478_residues
MFSAEVEPPWSFEAWRALARAGWCAQVEPDDVAWNGGAQGGLLMGQGLLALPAVVPPPRVSADFMQLAASVLCHRDPQRH
AVLYRLLWRVASGEKALLERATDVDVHRLRQWQKAVQRDTHKMKAFVRFRRLPGEEEDFVSWFEPEHWIVDRVAPFFARR
FAGMRWAILTPYRSVRWDGQALAFGEGAVRTQVPADDAQETLWRTYYAHIFNPARLNPTMMRQEMPQKYWKNLPEATLLP
ELIREAGVRVREMAERAPEPVRRRVPAAPAPLPDVVTQSLAQLRTAARDCRRCELWQPATQTVFGEGPDDASVMVIGEQP
GDEEDLSGRPFVGPAGRLFNMALGELGVDREKFYVTNAVKHFRFEQRGKRRLHRNPERTHVQACSGWLQAERAQLRPAQI
VCLGATAAQAVLGSSFRLMRERGQWQRLDDGTPVLTTVHPSWVLRQPSTDAREEGYRGFVEDLRRLLDPPPPSSDQSR

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 54399; Mature: 54399

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSAEVEPPWSFEAWRALARAGWCAQVEPDDVAWNGGAQGGLLMGQGLLALPAVVPPPRV
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHCCCCCCCCCC
SADFMQLAASVLCHRDPQRHAVLYRLLWRVASGEKALLERATDVDVHRLRQWQKAVQRDT
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
HKMKAFVRFRRLPGEEEDFVSWFEPEHWIVDRVAPFFARRFAGMRWAILTPYRSVRWDGQ
HHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCC
ALAFGEGAVRTQVPADDAQETLWRTYYAHIFNPARLNPTMMRQEMPQKYWKNLPEATLLP
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
ELIREAGVRVREMAERAPEPVRRRVPAAPAPLPDVVTQSLAQLRTAARDCRRCELWQPAT
HHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
QTVFGEGPDDASVMVIGEQPGDEEDLSGRPFVGPAGRLFNMALGELGVDREKFYVTNAVK
HHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
HFRFEQRGKRRLHRNPERTHVQACSGWLQAERAQLRPAQIVCLGATAAQAVLGSSFRLMR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHH
ERGQWQRLDDGTPVLTTVHPSWVLRQPSTDAREEGYRGFVEDLRRLLDPPPPSSDQSR
HCCCCCCCCCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MFSAEVEPPWSFEAWRALARAGWCAQVEPDDVAWNGGAQGGLLMGQGLLALPAVVPPPRV
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHCCCCCCCCCC
SADFMQLAASVLCHRDPQRHAVLYRLLWRVASGEKALLERATDVDVHRLRQWQKAVQRDT
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
HKMKAFVRFRRLPGEEEDFVSWFEPEHWIVDRVAPFFARRFAGMRWAILTPYRSVRWDGQ
HHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCC
ALAFGEGAVRTQVPADDAQETLWRTYYAHIFNPARLNPTMMRQEMPQKYWKNLPEATLLP
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
ELIREAGVRVREMAERAPEPVRRRVPAAPAPLPDVVTQSLAQLRTAARDCRRCELWQPAT
HHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
QTVFGEGPDDASVMVIGEQPGDEEDLSGRPFVGPAGRLFNMALGELGVDREKFYVTNAVK
HHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
HFRFEQRGKRRLHRNPERTHVQACSGWLQAERAQLRPAQIVCLGATAAQAVLGSSFRLMR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHH
ERGQWQRLDDGTPVLTTVHPSWVLRQPSTDAREEGYRGFVEDLRRLLDPPPPSSDQSR
HCCCCCCCCCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA