Click here to switch to the map view.

The map label for this gene is rsuA2 [H]

Identifier: 78049355

GI number: 78049355

Start: 4384092

End: 4384805

Strand: Reverse

Name: rsuA2 [H]

Synonym: XCV3799

Alternate gene names: 78049355

Gene position: 4384805-4384092 (Counterclockwise)

Preceding gene: 78049356

Following gene: 78049354

Centisome position: 84.67

GC content: 66.25

Gene sequence:

>714_bases
ATGAAGCTGGTCAAACACATCGCCAATCTCGGCTACGGCAGCCGCAAGCAGGTCACCCAGCTGTTCCGGCAGGGCGCGAT
CACCGATGCGCAAGGCGAGGTGCTGTATGCCGACGACCAGGTGGAGCACGACGCCATCCGCATCGATGGCGAACCGCTCG
ACCCGCCAGCGGGCTTGAGCCTGTTGCTGCATAAACCCAGCGGCTACACCTGCTCGACCAAGGACACCGGCCGGCTGATC
TACGAATTGCTGCCGCCACGTTTCCGCCTGCGCGCGCCGGTGTTGGCGCCAGTGGGTCGGTTGGACCGCGAGACCAGCGG
CATGCTGTTGATGACCGACGACGGCGCGCTGCTGCACCGGATCATTTCGCCCAAATCGGCCCTGGACAAGGTGTATGACA
TCACCCTGGCCGAGGACCTGCGTGGCGAGGAGGCCGCGCTGTTCGCCAGCGGCAGCTTGCTGTTGGACGGCGAAACCAAG
CCGCTGCTGCCGGCCGAGCTGGAGGTGCTTGGCCCACGCCAGGCGCGGCTGACCTTGCACGAAGGCCGCTATCACCAGGT
GCGGCGCATGTTCGCTGCCGCCGGTAACCACGTGGTCGCGCTGCACCGCAGCCGCATCGGCGGCCTGTCGCTGGATGGAT
TGTCGTCGGGGCAATGGCGTGCGCTGGAAGCGAACGATCTTGAGGTGTTGTTCAGCCGCGGCGCTCCGGCATGA

Upstream 100 bases:

>100_bases
ACGAACAGGTGCTCAACGACAGTTTCGGACAGGTCCGCGTGGCTGCCGAACGCGATGGGTTCAAGCTGATCGCGGCGATC
CGCGGCCGCGGAGCGCGCCC

Downstream 100 bases:

>100_bases
CCCACAGTGCAGCGCTGCCGTTTCGCCCGCAGGCGGTGATCTTCGACATGGATGGCTTGATGCTCGATAGCGAGCGCGCC
ATCACGGCCTGTCTGGCGCA

Product: ribosomal small subunit pseudouridylate synthase

Products: pseudouridine 5'-phosphate; H2O [C]

Alternate protein names: 16S pseudouridine 516 synthase; 16S pseudouridylate 516 synthase; rRNA pseudouridylate synthase A; rRNA-uridine isomerase A [H]

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MKLVKHIANLGYGSRKQVTQLFRQGAITDAQGEVLYADDQVEHDAIRIDGEPLDPPAGLSLLLHKPSGYTCSTKDTGRLI
YELLPPRFRLRAPVLAPVGRLDRETSGMLLMTDDGALLHRIISPKSALDKVYDITLAEDLRGEEAALFASGSLLLDGETK
PLLPAELEVLGPRQARLTLHEGRYHQVRRMFAAAGNHVVALHRSRIGGLSLDGLSSGQWRALEANDLEVLFSRGAPA

Sequences:

>Translated_237_residues
MKLVKHIANLGYGSRKQVTQLFRQGAITDAQGEVLYADDQVEHDAIRIDGEPLDPPAGLSLLLHKPSGYTCSTKDTGRLI
YELLPPRFRLRAPVLAPVGRLDRETSGMLLMTDDGALLHRIISPKSALDKVYDITLAEDLRGEEAALFASGSLLLDGETK
PLLPAELEVLGPRQARLTLHEGRYHQVRRMFAAAGNHVVALHRSRIGGLSLDGLSSGQWRALEANDLEVLFSRGAPA
>Mature_237_residues
MKLVKHIANLGYGSRKQVTQLFRQGAITDAQGEVLYADDQVEHDAIRIDGEPLDPPAGLSLLLHKPSGYTCSTKDTGRLI
YELLPPRFRLRAPVLAPVGRLDRETSGMLLMTDDGALLHRIISPKSALDKVYDITLAEDLRGEEAALFASGSLLLDGETK
PLLPAELEVLGPRQARLTLHEGRYHQVRRMFAAAGNHVVALHRSRIGGLSLDGLSSGQWRALEANDLEVLFSRGAPA

Specific function: Responsible for synthesis of pseudouridine from uracil- 516 in 16S ribosomal RNA [H]

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788510, Length=191, Percent_Identity=46.5968586387435, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1790453, Length=237, Percent_Identity=28.6919831223629, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1787524, Length=240, Percent_Identity=31.25, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87081838, Length=143, Percent_Identity=34.2657342657343, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: 4.2.1.70 [C]

Molecular weight: Translated: 25885; Mature: 25885

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVKHIANLGYGSRKQVTQLFRQGAITDAQGEVLYADDQVEHDAIRIDGEPLDPPAGLS
CHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCE
LLLHKPSGYTCSTKDTGRLIYELLPPRFRLRAPVLAPVGRLDRETSGMLLMTDDGALLHR
EEEECCCCCEECCCCHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEEECCHHHHHH
IISPKSALDKVYDITLAEDLRGEEAALFASGSLLLDGETKPLLPAELEVLGPRQARLTLH
HHCCHHHHHHHHEEEEHHHCCCCCEEEEECCCEEECCCCCCCCCCHHEEECCCCEEEEEE
EGRYHQVRRMFAAAGNHVVALHRSRIGGLSLDGLSSGQWRALEANDLEVLFSRGAPA
CCHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCCCCEEEECCCCEEEEECCCCCC
>Mature Secondary Structure
MKLVKHIANLGYGSRKQVTQLFRQGAITDAQGEVLYADDQVEHDAIRIDGEPLDPPAGLS
CHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCE
LLLHKPSGYTCSTKDTGRLIYELLPPRFRLRAPVLAPVGRLDRETSGMLLMTDDGALLHR
EEEECCCCCEECCCCHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEEECCHHHHHH
IISPKSALDKVYDITLAEDLRGEEAALFASGSLLLDGETKPLLPAELEVLGPRQARLTLH
HHCCHHHHHHHHEEEEHHHCCCCCEEEEECCCEEECCCCCCCCCCHHEEECCCCEEEEEE
EGRYHQVRRMFAAAGNHVVALHRSRIGGLSLDGLSSGQWRALEANDLEVLFSRGAPA
CCHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCCCCEEEECCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: uracil; D-ribose phosphate [C]

Specific reaction: uracil + D-ribose phosphate = pseudouridine 5'-phosphate + H2O [C]

General reaction: addition of H2O; elimination of H2O; C-O bond cleavage [C]

Inhibitor: 1-(Tetrahydro-2-furanyl)-5-fluorouracil; 5-fluorouracil [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]