Click here to switch to the map view.

The map label for this gene is 78048969

Identifier: 78048969

GI number: 78048969

Start: 3899877

End: 3901022

Strand: Reverse

Name: 78048969

Synonym: XCV3413

Alternate gene names: NA

Gene position: 3901022-3899877 (Counterclockwise)

Preceding gene: 78048970

Following gene: 78048966

Centisome position: 75.33

GC content: 59.95

Gene sequence:

>1146_bases
ATGGGGATGGCACTATCGAACGCGTTCCAAGCATTGAGGCAGGGGAAGCCGGTGGATCTGGACGAAGTGCTGCGCCGCAT
TCGAGAACAAGGACTGCGCGAACTCACATTGACCGATGTGACGCTGCCTAATGGCACGCGGCTGGGCAAGGCCCAGATCG
ATACCCCTGAAGACGCAGCGTTGTTTGCTGAGTTGTTGCGTGAGCCTGTCGCTGAGGTTGCCCCGTCCGCCAAGCCAAGC
GGCTGGCGCACTGGCAAGAAGGCGTCTGGCCCACTGTTGTCCAAAGCGATTGCGGATCACCTGGGGGACTTGGGTCGCGC
CAAGCTCCACAGCAAGACAGTGCTTGAAAGCCGCCACTCATTGCGTTTGTTTGCGGGTGCCGTGGGGCAAGACCTCGCGG
TGTCTGAGTTGACGGCAGACCACGTGCGCGCCTTTTTCGATGTTGTGCGATGGTGGCCGTCGAATGCGACCAAGCGCGCG
CCGTATAAGGGCCTTGCCGTCATGGACGTTGTGGCGCTTGCCCAAGCTAATCAAGTTCCCGAGCCTGCCGCTTGGACGGT
TGCCAAGCATCGGCAGCGCTTGTCGGTGTTCTTGGTGTCGCTGGTGTCGGCAGGGCTCTTGGCGAGCAATCCGTTGGCCG
GTATCCGTGCGATTGCCACGCCTGACGCAGACGACACGGGTGAGCCCTTCACCGATGACCAGTTGAAGGCCATCTTCGAT
CCAATGGCCTTCCCGGCGTGGGCCAAGAAGTATCCGCATCGGTGGTTTGGTCCGATGCTTGGGCTTTACTCGGGAGCGCG
CGTGAACGAGATCGCACAGCTTAGGGTGGAGGACATCGACACGATCGATGGGGTGCCAGGGTTCTTCGTGCGACAAGGTG
GGAAGGGGCAGAGCGTCAAGAACAAGAACAGCCGCCGCTTTGTGCCGTTGGCCAAGCCCGTGATCGATGCCGGTTTTCTG
GTCTACATCGATGAAGTGCGCCAAGCGAGGCACGCGCAGATCTTTCCGCATTTGCCCAATAGCACCGGACTGGGCTTTGG
TCGACAGTTGAGCCGACAGTTTTCGGTCTACATTAAACGTCAAGGGATCACGGCGAAGGGGCAAGGTAATCCCCCCGCTT
TTAGCGGTCGCCAGAAGTGGAGCTAA

Upstream 100 bases:

>100_bases
CTTGGTTCCTGTTGATTTGCGGGGGCAAGTCGGCTCGCGTTTTGTTGTTCGTCCTCTCCATCTTCGCCCCGGCGATACTG
CGCGTCTGGTGTCTGCCTAC

Downstream 100 bases:

>100_bases
GCGGCCATCGCCAACTTCATGGCAGGCGTGATGCCGCCGAGCGCCATATTCGGACGCTCGTGGTTGTACGTCCATAGCCA
GCGGGTGGCTTTGTCCTGCA

Product: putative phage-related integrase

Products: NA

Alternate protein names: Integrase Family Protein; Integrase; Phage Integrase Family Protein; Phage Integrase; Phage Integrase Family Site Specific Recombinase; Site-Specific Recombinase Phage Integrase Family; Integrase/Resolvase Recombinase Protein; DNA-Binfing Protein

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MGMALSNAFQALRQGKPVDLDEVLRRIREQGLRELTLTDVTLPNGTRLGKAQIDTPEDAALFAELLREPVAEVAPSAKPS
GWRTGKKASGPLLSKAIADHLGDLGRAKLHSKTVLESRHSLRLFAGAVGQDLAVSELTADHVRAFFDVVRWWPSNATKRA
PYKGLAVMDVVALAQANQVPEPAAWTVAKHRQRLSVFLVSLVSAGLLASNPLAGIRAIATPDADDTGEPFTDDQLKAIFD
PMAFPAWAKKYPHRWFGPMLGLYSGARVNEIAQLRVEDIDTIDGVPGFFVRQGGKGQSVKNKNSRRFVPLAKPVIDAGFL
VYIDEVRQARHAQIFPHLPNSTGLGFGRQLSRQFSVYIKRQGITAKGQGNPPAFSGRQKWS

Sequences:

>Translated_381_residues
MGMALSNAFQALRQGKPVDLDEVLRRIREQGLRELTLTDVTLPNGTRLGKAQIDTPEDAALFAELLREPVAEVAPSAKPS
GWRTGKKASGPLLSKAIADHLGDLGRAKLHSKTVLESRHSLRLFAGAVGQDLAVSELTADHVRAFFDVVRWWPSNATKRA
PYKGLAVMDVVALAQANQVPEPAAWTVAKHRQRLSVFLVSLVSAGLLASNPLAGIRAIATPDADDTGEPFTDDQLKAIFD
PMAFPAWAKKYPHRWFGPMLGLYSGARVNEIAQLRVEDIDTIDGVPGFFVRQGGKGQSVKNKNSRRFVPLAKPVIDAGFL
VYIDEVRQARHAQIFPHLPNSTGLGFGRQLSRQFSVYIKRQGITAKGQGNPPAFSGRQKWS
>Mature_380_residues
GMALSNAFQALRQGKPVDLDEVLRRIREQGLRELTLTDVTLPNGTRLGKAQIDTPEDAALFAELLREPVAEVAPSAKPSG
WRTGKKASGPLLSKAIADHLGDLGRAKLHSKTVLESRHSLRLFAGAVGQDLAVSELTADHVRAFFDVVRWWPSNATKRAP
YKGLAVMDVVALAQANQVPEPAAWTVAKHRQRLSVFLVSLVSAGLLASNPLAGIRAIATPDADDTGEPFTDDQLKAIFDP
MAFPAWAKKYPHRWFGPMLGLYSGARVNEIAQLRVEDIDTIDGVPGFFVRQGGKGQSVKNKNSRRFVPLAKPVIDAGFLV
YIDEVRQARHAQIFPHLPNSTGLGFGRQLSRQFSVYIKRQGITAKGQGNPPAFSGRQKWS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41605; Mature: 41474

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMALSNAFQALRQGKPVDLDEVLRRIREQGLRELTLTDVTLPNGTRLGKAQIDTPEDAA
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCHHHH
LFAELLREPVAEVAPSAKPSGWRTGKKASGPLLSKAIADHLGDLGRAKLHSKTVLESRHS
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLFAGAVGQDLAVSELTADHVRAFFDVVRWWPSNATKRAPYKGLAVMDVVALAQANQVP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
EPAAWTVAKHRQRLSVFLVSLVSAGLLASNPLAGIRAIATPDADDTGEPFTDDQLKAIFD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
PMAFPAWAKKYPHRWFGPMLGLYSGARVNEIAQLRVEDIDTIDGVPGFFVRQGGKGQSVK
HHCCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHEECCCCCCCCC
NKNSRRFVPLAKPVIDAGFLVYIDEVRQARHAQIFPHLPNSTGLGFGRQLSRQFSVYIKR
CCCCCEECCHHHHHHHCCHHEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEE
QGITAKGQGNPPAFSGRQKWS
CCCEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GMALSNAFQALRQGKPVDLDEVLRRIREQGLRELTLTDVTLPNGTRLGKAQIDTPEDAA
CCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCHHHH
LFAELLREPVAEVAPSAKPSGWRTGKKASGPLLSKAIADHLGDLGRAKLHSKTVLESRHS
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLFAGAVGQDLAVSELTADHVRAFFDVVRWWPSNATKRAPYKGLAVMDVVALAQANQVP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
EPAAWTVAKHRQRLSVFLVSLVSAGLLASNPLAGIRAIATPDADDTGEPFTDDQLKAIFD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
PMAFPAWAKKYPHRWFGPMLGLYSGARVNEIAQLRVEDIDTIDGVPGFFVRQGGKGQSVK
HHCCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHEECCCCCCCCC
NKNSRRFVPLAKPVIDAGFLVYIDEVRQARHAQIFPHLPNSTGLGFGRQLSRQFSVYIKR
CCCCCEECCHHHHHHHCCHHEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEE
QGITAKGQGNPPAFSGRQKWS
CCCEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA