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The map label for this gene is pal [H]

Identifier: 78048827

GI number: 78048827

Start: 3737974

End: 3738492

Strand: Reverse

Name: pal [H]

Synonym: XCV3271

Alternate gene names: 78048827

Gene position: 3738492-3737974 (Counterclockwise)

Preceding gene: 78048828

Following gene: 78048826

Centisome position: 72.19

GC content: 63.01

Gene sequence:

>519_bases
ATGAACAAGTCCACCCGCGTCTTGCTTGTCTCCCTGCTGTCCGTTGCTGTGCTGGCTGGTTGCTCGAAGAAGGTGAAGGA
AACTCCGCCTCCTGCGACCGATACCACCGCTGGTTCCTCGGTTCCCACCGGCCCGTCCACCTCTGGCCTGTACGGCCCGG
GCGACCTGGATACCGATGCCTGCCTGCGTCAGCGTGTTGTTTACTTCGATCTGGATCAGGACTCCCTGAAGCCGGAATTC
CAGGCCATCATGGCTTGCCACGCCAAGTACCTGCGTGACCGTCCTTCCTCGCGCATCACCCTGCAGGGCAATGCGGACGA
GCGTGGTTCGCGTGAGTACAACATGGGTCTGGGCGAGCGTCGCGGCAATGCCGTGTCGTCCTCGCTGCAGGCTGCCGGTG
GCTCGGCCAGCCAGCTGACCGTCGTCAGCTACGGCGAAGAGCGTCCGGTCTGCACCGAGTCGAACGAGTCCTGCTGGTCG
CAGAACCGCCGCGTCGAAATCGTGTACACGGCTCAGTAA

Upstream 100 bases:

>100_bases
TGTGAGAGAACCCGCATGGGGGCCTTACCGAACCGCGCATTAATGTTAATATTTCGCTGCGTTAAACCACTCATTGGCCC
AGAGCCTCCATAGGTACCCC

Downstream 100 bases:

>100_bases
GAAGCGATGCGCTTTCGAGTGACATCCCTGTTCGTCGCGGCGGCCCTCGTGGTCGCCGCGCCGGCATACGCCCAGCGAGC
CAGTCTCGCTGATCGTGTGG

Product: PAL family outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MNKSTRVLLVSLLSVAVLAGCSKKVKETPPPATDTTAGSSVPTGPSTSGLYGPGDLDTDACLRQRVVYFDLDQDSLKPEF
QAIMACHAKYLRDRPSSRITLQGNADERGSREYNMGLGERRGNAVSSSLQAAGGSASQLTVVSYGEERPVCTESNESCWS
QNRRVEIVYTAQ

Sequences:

>Translated_172_residues
MNKSTRVLLVSLLSVAVLAGCSKKVKETPPPATDTTAGSSVPTGPSTSGLYGPGDLDTDACLRQRVVYFDLDQDSLKPEF
QAIMACHAKYLRDRPSSRITLQGNADERGSREYNMGLGERRGNAVSSSLQAAGGSASQLTVVSYGEERPVCTESNESCWS
QNRRVEIVYTAQ
>Mature_172_residues
MNKSTRVLLVSLLSVAVLAGCSKKVKETPPPATDTTAGSSVPTGPSTSGLYGPGDLDTDACLRQRVVYFDLDQDSLKPEF
QAIMACHAKYLRDRPSSRITLQGNADERGSREYNMGLGERRGNAVSSSLQAAGGSASQLTVVSYGEERPVCTESNESCWS
QNRRVEIVYTAQ

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=177, Percent_Identity=36.7231638418079, Blast_Score=122, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18495; Mature: 18495

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSTRVLLVSLLSVAVLAGCSKKVKETPPPATDTTAGSSVPTGPSTSGLYGPGDLDTDA
CCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
CLRQRVVYFDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNADERGSREYNMGLGER
HHHCCEEEEECCCHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEECCCCCCC
RGNAVSSSLQAAGGSASQLTVVSYGEERPVCTESNESCWSQNRRVEIVYTAQ
CCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEEEEECC
>Mature Secondary Structure
MNKSTRVLLVSLLSVAVLAGCSKKVKETPPPATDTTAGSSVPTGPSTSGLYGPGDLDTDA
CCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
CLRQRVVYFDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNADERGSREYNMGLGER
HHHCCEEEEECCCHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEECCCCCCC
RGNAVSSSLQAAGGSASQLTVVSYGEERPVCTESNESCWSQNRRVEIVYTAQ
CCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]