| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is mcrB [H]
Identifier: 78048797
GI number: 78048797
Start: 3698445
End: 3700892
Strand: Reverse
Name: mcrB [H]
Synonym: XCV3241
Alternate gene names: 78048797
Gene position: 3700892-3698445 (Counterclockwise)
Preceding gene: 78048799
Following gene: 78048796
Centisome position: 71.47
GC content: 68.14
Gene sequence:
>2448_bases GTGCCCCGACGCCACGACAACGACGCTCCCGACGATTTCGAGGACGACACCAACGCGCAAGGCTCCCGCTGGCAACGCAG ACTCATCGTCTGGGGATTTGCCGCGTTCGCGCTGGCGCTCGGTTTCCTGATTCCCTATACGATGTATCTCAACAAGCAGG TCACCCAGCGCTTTGGCGAACTGCGTTGGCAGATCCCGACCCGCGTATACGGCCGGCCGCTGGTGCTCGTGCCGGGCAAC GCACTGGATGCGGCCACCCTGAAGACCGAGCTGGACGCGGCGTCGTACCGCGACGACGGTCAGGCGAAGCTGGCCGGCAC CTACCAGCAGGACGGCAGCCGCTTCACCATCGCCAGCCGCGGCTACATCGATGTGGATGGACGCGTGCCGGCGCGCCGGG TCGAAGTCAGCCTGGCCGGTGGGCGCGTGGCCAGCCTGCGCGACGCCGGCGACCGCAAGGCGCTCAAAAGCGCACGCCTG GACCCGGCGCGCATTGCCACCCTGTACGGCCAGAAGCAGGAAGAGCGCCGCCTGGTGCGCATGGAAGAAGTGCCCGAGCT GCTGGTCACCGGCCTGCAGGCAGTGGAAGACCGCGACTTCAACAGCCACCACGGCATCGACCTGAGCGGCATGGTGCGCG CGGCCTGGATCATGGCGCGCTCCGGCGGCCAGGTCCGCCAGGGCGCCAGCACCCTGACCCAGCAGCTGGCCCGCAGCGGC CTGCTCGGCATCGGCAAGGAACAGACGCTCACGCGCAAGTTCAACGAGATCCTGTATGCGGTGATCATGGAGGCGCGCTA CGACAAGCGCACCATCCTGGAGGCCTATCTCAACCAGGTCTATCTGGGCCAGCGCGGCGGCCAGGCGATCCACGGCGTGT CCTCGGGCGCAGAGCTGTGGTTCGGCCGCGAACTCAATTCGATGACCACCGAGCAGATCGCATTGTTGATCGGGCTGGTC AAGGGGCCCTCGTACTACGACCCGCGGCGTAACCCGGAACGCGCGCTGGACCGGCGCAATTTCGTGCTCGGCAAGCTGCA CGAAAACAACCTGATCAACGACGCCGAATACAAGCGCGCACTGGCTGCGCCGTTGGGCGTGCCGACCGAGCCCGGCCTGG TCGCCGCCAACCGCTTCCCGGCGTATGTGGACCTGGTGCGACGCCAGCTGGCGCACGACTATCCGGAAGGCGTGCTGCAG GGCGCCGGCATGAGCGTGCTCACCGGCATGTCGCCGTCTGCGCAGGCGTATGCCGAAGGTGCAGTGACCGGCACCATCAA GCGGCTGGACAACAAGAAGCGACCGCCGCTGCAGGCAGGATTGGTGCTCACCGACGTGCACAACGGCGATGTGCTGGCCG TGGTCGGCAGCCGCGATGTGGCCAAGCCGGGTTTCAATCGTGCGGTGGAAGCGCAGCGGCAGGTGGGCTCGTTGCTCAAG CCGTTCGTCTACATGCTGGCCTTGGCTTCGCCGGACCGCTGGGCGCTGTCCAGCTGGGTCGACGACTCGCCGGTGACCGT GCAGCTCAGCCGCGGCAAGACCTGGTCGCCGGGCAATTCCGACAATCGCAGCCACGGCACGGTGCGCCTGGTCGATGCGC TGGCGCATTCCTACAACCAGGCCACGGTGCGGGTGGGCATGCAGGTCGGCGCGGACCGCATCGCGCAGCTGATCCAGGTC TTGGCCGGTATCAAGGCCGAGCCCAATCCGGCGCTGATCCTGGGCACCACTGACCAGAGCCCGTATGGCATGGCGCAGCT GTACCAATTCCTGGCAGCCGGCGGCGAGATCCAGCCACTGCATGCGGTGCGCGGTGTGCTCGACCCGCAGGGCAAGCTGC TCAAGCGCTACGACAAGACCCCGGCCCCGGCCCAGGAAGGCGACTCGGTGGCCGCCAACCTCATCAGCATCGGCCTGCAG CAGGTGGTCAGCGGCGGCACCGCGCGCCAGTTGCTGAGCGATGGCCTGGGGCGCCTGTCGTCGGCCGGCAAGACCGGCAC CTCCAACGACGGTCGCGACAGCTGGTATGCCGGCTACACCGGCGACCATCTGGCAGTGATCTGGATGGGCAACGACCAGA ACGCAGAGACCGGCCTGTATGGCGCCACCGGTGCGATGCGGGTGTGGTCGAGCATCTTTGCCCGCCTGCCGAGTGCGCCA TTGAAGGTCAGTGGGAAAGGCCTGGATTGGCAGTGGGTGGACGCCAGCGGCACCGGCGTGACCGACCCGGGCTGCCCGGG CGCGCGCCAGTTCCCGTTCGTGGTCGGCTTCACACCGGCCTACGCGCCGTGCGCGGGCAATGCGCCGTCGATCGAAGCTG CGCCCGGCGAAGCGGCCGCTCCTGCCGAACAATCCAGCGGCGGCGGCGGCTGGCGCCGCTTCTTTGGCCTGGAAAAGAAG CCCGAAGACCCTGCCGCCGCCCCCGCAGCGGCCCAACCCACGCGTTGA
Upstream 100 bases:
>100_bases TCGGGCGTTTTGTTAGCCGCTCTTAACGGCCGACGGGGCCGGCAGGTCACAGCCATGACAGCGCTGCTAGACTCGCCGGA CTCTACATTCTCGCATTCCT
Downstream 100 bases:
>100_bases TTGGAATGACCCCATGAACCGACTGCACCGTTTGCTCGCCCTGATCGGCGTCCTGGCCGCACTCACTGCCTGCCTCAGCG CACCGCCCGCGCCGCCGCCG
Product: penicillin-binding protein 1B
Products: NA
Alternate protein names: PBP-1b; PBP1b; Murein polymerase; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Peptidoglycan glycosyltransferase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 815; Mature: 814
Protein sequence:
>815_residues MPRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTMYLNKQVTQRFGELRWQIPTRVYGRPLVLVPGN ALDAATLKTELDAASYRDDGQAKLAGTYQQDGSRFTIASRGYIDVDGRVPARRVEVSLAGGRVASLRDAGDRKALKSARL DPARIATLYGQKQEERRLVRMEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELWFGRELNSMTTEQIALLIGLV KGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRALAAPLGVPTEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQ GAGMSVLTGMSPSAQAYAEGAVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSRDVAKPGFNRAVEAQRQVGSLLK PFVYMLALASPDRWALSSWVDDSPVTVQLSRGKTWSPGNSDNRSHGTVRLVDALAHSYNQATVRVGMQVGADRIAQLIQV LAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPLHAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQ QVVSGGTARQLLSDGLGRLSSAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP LKVSGKGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAAPAEQSSGGGGWRRFFGLEKK PEDPAAAPAAAQPTR
Sequences:
>Translated_815_residues MPRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTMYLNKQVTQRFGELRWQIPTRVYGRPLVLVPGN ALDAATLKTELDAASYRDDGQAKLAGTYQQDGSRFTIASRGYIDVDGRVPARRVEVSLAGGRVASLRDAGDRKALKSARL DPARIATLYGQKQEERRLVRMEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELWFGRELNSMTTEQIALLIGLV KGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRALAAPLGVPTEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQ GAGMSVLTGMSPSAQAYAEGAVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSRDVAKPGFNRAVEAQRQVGSLLK PFVYMLALASPDRWALSSWVDDSPVTVQLSRGKTWSPGNSDNRSHGTVRLVDALAHSYNQATVRVGMQVGADRIAQLIQV LAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPLHAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQ QVVSGGTARQLLSDGLGRLSSAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP LKVSGKGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAAPAEQSSGGGGWRRFFGLEKK PEDPAAAPAAAQPTR >Mature_814_residues PRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTMYLNKQVTQRFGELRWQIPTRVYGRPLVLVPGNA LDAATLKTELDAASYRDDGQAKLAGTYQQDGSRFTIASRGYIDVDGRVPARRVEVSLAGGRVASLRDAGDRKALKSARLD PARIATLYGQKQEERRLVRMEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSGL LGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELWFGRELNSMTTEQIALLIGLVK GPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRALAAPLGVPTEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQG AGMSVLTGMSPSAQAYAEGAVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSRDVAKPGFNRAVEAQRQVGSLLKP FVYMLALASPDRWALSSWVDDSPVTVQLSRGKTWSPGNSDNRSHGTVRLVDALAHSYNQATVRVGMQVGADRIAQLIQVL AGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPLHAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQQ VVSGGTARQLLSDGLGRLSSAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAPL KVSGKGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAAPAEQSSGGGGWRRFFGLEKKP EDPAAAPAAAQPTR
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=700, Percent_Identity=35.5714285714286, Blast_Score=387, Evalue=1e-108, Organism=Escherichia coli, GI87082258, Length=286, Percent_Identity=32.8671328671329, Blast_Score=144, Evalue=2e-35, Organism=Escherichia coli, GI1788867, Length=544, Percent_Identity=27.9411764705882, Blast_Score=121, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011813 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: =2.4.1.129 [H]
Molecular weight: Translated: 87925; Mature: 87794
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTMYLNKQVTQRFGE CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRWQIPTRVYGRPLVLVPGNALDAATLKTELDAASYRDDGQAKLAGTYQQDGSRFTIASR HEEECCHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCEEEEEEC GYIDVDGRVPARRVEVSLAGGRVASLRDAGDRKALKSARLDPARIATLYGQKQEERRLVR CEEEECCCCCCEEEEEEECCCCEEHHHCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH MEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELW CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEE FGRELNSMTTEQIALLIGLVKGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRA ECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHH LAAPLGVPTEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQGAGMSVLTGMSPSAQAYAEG HHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCCEEECCCCCHHHHHCC AVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSRDVAKPGFNRAVEAQRQVGSLLK CHHHHHHHHCCCCCCCHHHCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH PFVYMLALASPDRWALSSWVDDSPVTVQLSRGKTWSPGNSDNRSHGTVRLVDALAHSYNQ HHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC ATVRVGMQVGADRIAQLIQVLAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPL EEEEEHHHHCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCHH HAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQQVVSGGTARQLLSDGLGRLS HHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH SAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP CCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC LKVSGKGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAA EEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC PAEQSSGGGGWRRFFGLEKKPEDPAAAPAAAQPTR CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTMYLNKQVTQRFGE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRWQIPTRVYGRPLVLVPGNALDAATLKTELDAASYRDDGQAKLAGTYQQDGSRFTIASR HEEECCHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCEEEEEEC GYIDVDGRVPARRVEVSLAGGRVASLRDAGDRKALKSARLDPARIATLYGQKQEERRLVR CEEEECCCCCCEEEEEEECCCCEEHHHCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH MEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELW CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEE FGRELNSMTTEQIALLIGLVKGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRA ECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHH LAAPLGVPTEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQGAGMSVLTGMSPSAQAYAEG HHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCCEEECCCCCHHHHHCC AVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSRDVAKPGFNRAVEAQRQVGSLLK CHHHHHHHHCCCCCCCHHHCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH PFVYMLALASPDRWALSSWVDDSPVTVQLSRGKTWSPGNSDNRSHGTVRLVDALAHSYNQ HHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC ATVRVGMQVGADRIAQLIQVLAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPL EEEEEHHHHCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCHH HAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQQVVSGGTARQLLSDGLGRLS HHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH SAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP CCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC LKVSGKGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAA EEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC PAEQSSGGGGWRRFFGLEKKPEDPAAAPAAAQPTR CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]