Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 78048605

GI number: 78048605

Start: 3473320

End: 3473853

Strand: Reverse

Name: ssb [H]

Synonym: XCV3049

Alternate gene names: 78048605

Gene position: 3473853-3473320 (Counterclockwise)

Preceding gene: 78048607

Following gene: 78048603

Centisome position: 67.08

GC content: 66.29

Gene sequence:

>534_bases
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTCTACGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCGCCGCGTCAGCAGGGCG
GCGGTGGTGGGCAGGGTGGTGGATACGGCGGCGGTGGCGGTGGTCAGGACTATGCGCCGCGCCGTCAGCAGCCGGCCCAG
CAGCAGTCGGCACCGCCGATGGACGATTTCGCAGACGACGATATCCCGTTCTGA

Upstream 100 bases:

>100_bases
CAACCCGCCAGGACCGCCGAGCGGCAGGTGCGGTAACATTGCCGCACAGACATTCATCGTTGCGCGCTCCCGGCGCCAGC
GCATCATCTCGGAAGCACCT

Downstream 100 bases:

>100_bases
GGACAGCTCGTCGTTGCGTCATCCAGGAAGGCCCGCATTGCGCGGGCCTTCCGCGTTATGGGAAGTCCGCGCAGGCATTG
GCCGGTTTCGGCAGAACGGC

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGGGQDYAPRRQQPAQ
QQSAPPMDDFADDDIPF

Sequences:

>Translated_177_residues
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGGGQDYAPRRQQPAQ
QQSAPPMDDFADDDIPF
>Mature_176_residues
ARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEGE
LRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGGGQDYAPRRQQPAQQ
QSAPPMDDFADDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=116, Percent_Identity=32.7586206896552, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1790494, Length=180, Percent_Identity=49.4444444444444, Blast_Score=149, Evalue=9e-38,
Organism=Drosophila melanogaster, GI85725234, Length=106, Percent_Identity=35.8490566037736, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24647376, Length=106, Percent_Identity=35.8490566037736, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 18925; Mature: 18794

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFG
CCCCCCEEEEECCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEH
KLGEIAGEYLRKGSQVYVEGELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMG
HHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GDRPQRSAPRQQGGGGGQGGGYGGGGGGQDYAPRRQQPAQQQSAPPMDDFADDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFG
CCCCCEEEEECCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEH
KLGEIAGEYLRKGSQVYVEGELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMG
HHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GDRPQRSAPRQQGGGGGQGGGYGGGGGGQDYAPRRQQPAQQQSAPPMDDFADDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]