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The map label for this gene is yagT [H]

Identifier: 78048602

GI number: 78048602

Start: 3469175

End: 3469825

Strand: Reverse

Name: yagT [H]

Synonym: XCV3046

Alternate gene names: 78048602

Gene position: 3469825-3469175 (Counterclockwise)

Preceding gene: 78048603

Following gene: 78048601

Centisome position: 67.0

GC content: 62.52

Gene sequence:

>651_bases
ATGAGAGACATCAAGATGACCCGTCGCGAGGTATTGATCGCAGGAACGGCATCGGCAGCCAGCGTTGCCGCAACCCAGTC
GATGGCCGCCACCGCCGCCACTGCGATCTCGCAGCGGCCGGCAACCGAGCCTGCCAATGCATCCAGCCAGGTCGCTTTCG
AGGTGAACGGCAAACCGGTCACGCTGACGCTGGATAACCGCACCACCTTGCTGGATGCGCTGCGCGAACATCTACATCTC
ACCGGCACCAAGAAGGGCTGCGATCACGGCCAGTGCGGCGCCTGTACGGTCATCGTCGACGGGCAACGCATGAACGCATG
CCTGTCGCTGGCAGTGATGCACGAGGGCGCCAAGGTCACCACCATCGAAGGGTTGGGCAGGCCGGACAAGCTGCATCCCA
TGCAGGCGGCGTTCGTCAAGCACGATGGCTACCAATGCGGGTATTGCACGCCCGGGCAGATCTGTTCGGCAGTGGCGGTG
CTGGACGAGGTGAAGCGCGGGATCCCCAGCCATGTCACCGAAGACCTCACCGGAAAGACCAAGCTCACCACACCCGAATT
GCAGGAGCGCATGAGCGGCAATATTTGCCGCTGCGGTGCGTATTCCAACATCGTTGAAGCCATCAACGACGTTGCCGGAG
GCCGCGCATGA

Upstream 100 bases:

>100_bases
TCACGCCCGCAGGCGCCACCGCGCACTCACGCGCTTGTGACCGGCAGCGCTGCACATTGATTGAGAACTGTAAAAGCCAG
CATTGTTGGAGATGCCAGCC

Downstream 100 bases:

>100_bases
AGGCCTTTAGCTACGAGCGGGCCACCTCGCCAGCCGATGCGGCAGCCAAGGCCGCGCGCCAGCCCGGTGCCAAGTTCATT
GCAGGCGGGACCAACCTGCT

Product: putative xanthine dehydrogenase iron-sulfur-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MRDIKMTRREVLIAGTASAASVAATQSMAATAATAISQRPATEPANASSQVAFEVNGKPVTLTLDNRTTLLDALREHLHL
TGTKKGCDHGQCGACTVIVDGQRMNACLSLAVMHEGAKVTTIEGLGRPDKLHPMQAAFVKHDGYQCGYCTPGQICSAVAV
LDEVKRGIPSHVTEDLTGKTKLTTPELQERMSGNICRCGAYSNIVEAINDVAGGRA

Sequences:

>Translated_216_residues
MRDIKMTRREVLIAGTASAASVAATQSMAATAATAISQRPATEPANASSQVAFEVNGKPVTLTLDNRTTLLDALREHLHL
TGTKKGCDHGQCGACTVIVDGQRMNACLSLAVMHEGAKVTTIEGLGRPDKLHPMQAAFVKHDGYQCGYCTPGQICSAVAV
LDEVKRGIPSHVTEDLTGKTKLTTPELQERMSGNICRCGAYSNIVEAINDVAGGRA
>Mature_216_residues
MRDIKMTRREVLIAGTASAASVAATQSMAATAATAISQRPATEPANASSQVAFEVNGKPVTLTLDNRTTLLDALREHLHL
TGTKKGCDHGQCGACTVIVDGQRMNACLSLAVMHEGAKVTTIEGLGRPDKLHPMQAAFVKHDGYQCGYCTPGQICSAVAV
LDEVKRGIPSHVTEDLTGKTKLTTPELQERMSGNICRCGAYSNIVEAINDVAGGRA

Specific function: Iron-sulfur subunit of the xanthine dehydrogenase complex [H]

COG id: COG2080

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=177, Percent_Identity=36.7231638418079, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI71773480, Length=174, Percent_Identity=37.9310344827586, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1786480, Length=211, Percent_Identity=62.085308056872, Blast_Score=264, Evalue=4e-72,
Organism=Escherichia coli, GI1789232, Length=167, Percent_Identity=37.125748502994, Blast_Score=105, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17540638, Length=176, Percent_Identity=36.3636363636364, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17539860, Length=169, Percent_Identity=34.3195266272189, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI32566215, Length=169, Percent_Identity=34.3195266272189, Blast_Score=93, Evalue=9e-20,
Organism=Drosophila melanogaster, GI17737937, Length=172, Percent_Identity=40.1162790697674, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24647199, Length=168, Percent_Identity=33.9285714285714, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24647195, Length=176, Percent_Identity=32.3863636363636, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24647197, Length=176, Percent_Identity=32.3863636363636, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24647201, Length=168, Percent_Identity=32.7380952380952, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24647193, Length=150, Percent_Identity=34.6666666666667, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002888
- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]

EC number: NA

Molecular weight: Translated: 22748; Mature: 22748

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS ; PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2 ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDIKMTRREVLIAGTASAASVAATQSMAATAATAISQRPATEPANASSQVAFEVNGKPV
CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCEEE
TLTLDNRTTLLDALREHLHLTGTKKGCDHGQCGACTVIVDGQRMNACLSLAVMHEGAKVT
EEEECCCHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEE
TIEGLGRPDKLHPMQAAFVKHDGYQCGYCTPGQICSAVAVLDEVKRGIPSHVTEDLTGKT
EECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
KLTTPELQERMSGNICRCGAYSNIVEAINDVAGGRA
CCCCHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRDIKMTRREVLIAGTASAASVAATQSMAATAATAISQRPATEPANASSQVAFEVNGKPV
CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCEEE
TLTLDNRTTLLDALREHLHLTGTKKGCDHGQCGACTVIVDGQRMNACLSLAVMHEGAKVT
EEEECCCHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEE
TIEGLGRPDKLHPMQAAFVKHDGYQCGYCTPGQICSAVAVLDEVKRGIPSHVTEDLTGKT
EECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
KLTTPELQERMSGNICRCGAYSNIVEAINDVAGGRA
CCCCHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]