| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
Click here to switch to the map view.
The map label for this gene is yieH [H]
Identifier: 78048593
GI number: 78048593
Start: 3458419
End: 3459123
Strand: Reverse
Name: yieH [H]
Synonym: XCV3037
Alternate gene names: 78048593
Gene position: 3459123-3458419 (Counterclockwise)
Preceding gene: 78048596
Following gene: 78048591
Centisome position: 66.8
GC content: 65.25
Gene sequence:
>705_bases ATGGCGCTTTGTGAGCAGATGGGTGCGATGGCGTACGAGCTACTGATCAGTGACTGTGATGGCGTTCTTGTCGACAGCGA GATACTGGCCGACCGGGTAATGCGTGAGGCGCTGGCGTCTTTCGTGCCAAGCGAGCCGCTGGAACAGCTGCTGGAAACCA CCTTCGGGCAGACCACGCGCGAGGTGCTGCGGCGGGTGGAAGAGCGCTTTGCATTGCAGTTGCCAGAGACCCTGCTCGCG CAGATCCAGGCGCGCAGCGAGGCCTTGATCCAGGCGCAGGTGCAGCCGATCGCAGGCGTACGCGAGGCGTTGGAGCAGAT TCCACTGCCGTTGGCGGTGGCCTCCAATAGCCGGCGCCACAATGTGATTGCCTCGGTGGAACGGGCCGGGCTCACCGCAC GCGCGGCGGGACGTATTTTCAGCGCCGACATGGTGGAGCGGCCCAAGCCGGCACCGGACGTGTATCTGCTGGCGGCACGC ACCGCCGGAGTCGCGCCGCAGCGTTGTGTGGTCATCGAAGACAGCCCCACCGGTGCAACCGCGGCCGTGACGGCCGGCAT GCAGGTGCTGGGGTTTACCGGTGCAAGCCACATTCCACCGGGGCATGGCGACACCCTGCGCCGCATCGGTGTGCTTGAAG TGTTCGACGACATGCGTGATTTGCCTGCGCTGTTCGCGCGGTTGGCGCAAAAGCGGGCTGGGTAA
Upstream 100 bases:
>100_bases GGGGCCGCCTGTCCTGATGGTGCGCATGCTGCAAGCGGCGACGGTGTCCATCGCCACAGCCTGCTGCCCCACAGCCGACG GTCACACCCGGGCCGGCATA
Downstream 100 bases:
>100_bases GGCGGCAGCTTGGTGAGGGGGGGCGGTGTCATGGGTACGCAGTGGCCCCGTCCCGCAAGCGGCGAGGACACCGCGCCGCA AGGTGTTCGGTTGTCTTGTC
Product: haloacid dehalogenase-like hydrolase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MALCEQMGAMAYELLISDCDGVLVDSEILADRVMREALASFVPSEPLEQLLETTFGQTTREVLRRVEERFALQLPETLLA QIQARSEALIQAQVQPIAGVREALEQIPLPLAVASNSRRHNVIASVERAGLTARAAGRIFSADMVERPKPAPDVYLLAAR TAGVAPQRCVVIEDSPTGATAAVTAGMQVLGFTGASHIPPGHGDTLRRIGVLEVFDDMRDLPALFARLAQKRAG
Sequences:
>Translated_234_residues MALCEQMGAMAYELLISDCDGVLVDSEILADRVMREALASFVPSEPLEQLLETTFGQTTREVLRRVEERFALQLPETLLA QIQARSEALIQAQVQPIAGVREALEQIPLPLAVASNSRRHNVIASVERAGLTARAAGRIFSADMVERPKPAPDVYLLAAR TAGVAPQRCVVIEDSPTGATAAVTAGMQVLGFTGASHIPPGHGDTLRRIGVLEVFDDMRDLPALFARLAQKRAG >Mature_233_residues ALCEQMGAMAYELLISDCDGVLVDSEILADRVMREALASFVPSEPLEQLLETTFGQTTREVLRRVEERFALQLPETLLAQ IQARSEALIQAQVQPIAGVREALEQIPLPLAVASNSRRHNVIASVERAGLTARAAGRIFSADMVERPKPAPDVYLLAART AGVAPQRCVVIEDSPTGATAAVTAGMQVLGFTGASHIPPGHGDTLRRIGVLEVFDDMRDLPALFARLAQKRAG
Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates phosphoenolpyruvate and AMP [H]
COG id: COG0637
COG function: function code R; Predicted phosphatase/phosphohexomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
Organism=Escherichia coli, GI1790151, Length=189, Percent_Identity=26.4550264550265, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789046, Length=180, Percent_Identity=31.1111111111111, Blast_Score=63, Evalue=2e-11, Organism=Drosophila melanogaster, GI17137324, Length=183, Percent_Identity=30.0546448087432, Blast_Score=68, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006439 - InterPro: IPR006402 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 25191; Mature: 25060
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALCEQMGAMAYELLISDCDGVLVDSEILADRVMREALASFVPSEPLEQLLETTFGQTTR CCHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHH EVLRRVEERFALQLPETLLAQIQARSEALIQAQVQPIAGVREALEQIPLPLAVASNSRRH HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHH NVIASVERAGLTARAAGRIFSADMVERPKPAPDVYLLAARTAGVAPQRCVVIEDSPTGAT HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCEEEEEECCCCCCH AAVTAGMQVLGFTGASHIPPGHGDTLRRIGVLEVFDDMRDLPALFARLAQKRAG HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ALCEQMGAMAYELLISDCDGVLVDSEILADRVMREALASFVPSEPLEQLLETTFGQTTR CHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHH EVLRRVEERFALQLPETLLAQIQARSEALIQAQVQPIAGVREALEQIPLPLAVASNSRRH HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHH NVIASVERAGLTARAAGRIFSADMVERPKPAPDVYLLAARTAGVAPQRCVVIEDSPTGAT HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCEEEEEECCCCCCH AAVTAGMQVLGFTGASHIPPGHGDTLRRIGVLEVFDDMRDLPALFARLAQKRAG HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7686882; 9278503 [H]