Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 78048557

GI number: 78048557

Start: 3411873

End: 3412553

Strand: Reverse

Name: ycdC [C]

Synonym: XCV3001

Alternate gene names: 78048557

Gene position: 3412553-3411873 (Counterclockwise)

Preceding gene: 78048558

Following gene: 78048555

Centisome position: 65.9

GC content: 66.23

Gene sequence:

>681_bases
GTGGATGACGACGCACCGTCGGTTGCGCCCAGGCGTGCGCCGCACGACAAGCGTGGCGCCATCCTGGCGGCGGCACGCGT
GCTGTTTCAGCAGCACGGCTTCGACAGGACCAGCATGGACACCATCGCCGAGCGCGCGATGGTGTCCAAGGCCACGGTAT
ATGCGCATTTCGCGTCCAAGGAGGTGCTGTTCCGCACCACCCTGGAAGCGCTGGCGCAGGCCTCGCCCAATCGCTGGACG
GCCTTGCTGGAGCTGCAGGGGCCGCTGGAGCAACGCCTGACTGCGGTAGCCGATGCAGTGCTGCGCGTGTCTGCCAGCAG
CATGCGGGATGATGCCGCGTATGGCCTGGTACGCCCGCCACTGCTGCCTGGCCAGGTGCGCGAGGAAATGTGGACGCTGT
GCTTCGAGCGCTACGACACCATGATGCGCACGCTATTGGCGCGCGAGGTGCAACGCGGCGCATTGGTGATCGACAACCTG
CCCGATGCATCGGTGCATTTTTTCGGATTGATGACCGGGCGGCCGGCCACCGCTGCCGCGCGCGGCGATGCGCCAGAGGC
GCAATCGGTGCAGCTGGATGCGTATGTCAGCGGCGCGGTGGCATTGTTCCTGCGGGCGTATCGTGCGAACCCGACGGCTC
CGACAACGCAAGGCAGGCGCGAAGTACCGAGTGGTTTTTAG

Upstream 100 bases:

>100_bases
CGCTTCACCAACCTGGTGACGTTCTACAAGGCCATGGGCGGGGGCTGGCTGCAAAGCGCAGCGCCCACTGCCGCCGCGGC
CCCGGCAACGGAGCCGCCGC

Downstream 100 bases:

>100_bases
TGAGGGCTTGACCTTGAGCGACGAGGACCTTGCGCGTCTCCAGCAGGCGCTGGATGCGGTGGCGATTGTCGGTGCGCGTT
ACAGCCCGGAGCGGCAGAAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; TetR-Type Transcriptional Regulator; TetR Family Regulatory Protein

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MDDDAPSVAPRRAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASKEVLFRTTLEALAQASPNRWT
ALLELQGPLEQRLTAVADAVLRVSASSMRDDAAYGLVRPPLLPGQVREEMWTLCFERYDTMMRTLLAREVQRGALVIDNL
PDASVHFFGLMTGRPATAAARGDAPEAQSVQLDAYVSGAVALFLRAYRANPTAPTTQGRREVPSGF

Sequences:

>Translated_226_residues
MDDDAPSVAPRRAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASKEVLFRTTLEALAQASPNRWT
ALLELQGPLEQRLTAVADAVLRVSASSMRDDAAYGLVRPPLLPGQVREEMWTLCFERYDTMMRTLLAREVQRGALVIDNL
PDASVHFFGLMTGRPATAAARGDAPEAQSVQLDAYVSGAVALFLRAYRANPTAPTTQGRREVPSGF
>Mature_226_residues
MDDDAPSVAPRRAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASKEVLFRTTLEALAQASPNRWT
ALLELQGPLEQRLTAVADAVLRVSASSMRDDAAYGLVRPPLLPGQVREEMWTLCFERYDTMMRTLLAREVQRGALVIDNL
PDASVHFFGLMTGRPATAAARGDAPEAQSVQLDAYVSGAVALFLRAYRANPTAPTTQGRREVPSGF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24727; Mature: 24727

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDDAPSVAPRRAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCH
EVLFRTTLEALAQASPNRWTALLELQGPLEQRLTAVADAVLRVSASSMRDDAAYGLVRPP
HHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
LLPGQVREEMWTLCFERYDTMMRTLLAREVQRGALVIDNLPDASVHFFGLMTGRPATAAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCCCCCCC
RGDAPEAQSVQLDAYVSGAVALFLRAYRANPTAPTTQGRREVPSGF
CCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDDDAPSVAPRRAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCH
EVLFRTTLEALAQASPNRWTALLELQGPLEQRLTAVADAVLRVSASSMRDDAAYGLVRPP
HHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
LLPGQVREEMWTLCFERYDTMMRTLLAREVQRGALVIDNLPDASVHFFGLMTGRPATAAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCCCCCCC
RGDAPEAQSVQLDAYVSGAVALFLRAYRANPTAPTTQGRREVPSGF
CCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA