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The map label for this gene is rng [H]

Identifier: 78048483

GI number: 78048483

Start: 3330051

End: 3331550

Strand: Reverse

Name: rng [H]

Synonym: XCV2927

Alternate gene names: 78048483

Gene position: 3331550-3330051 (Counterclockwise)

Preceding gene: 78048484

Following gene: 78048482

Centisome position: 64.33

GC content: 65.47

Gene sequence:

>1500_bases
ATGTCGGAAGAGATTTTGGTCAACGTCACCCCGCGCGAGACCCGTGTGGCGGTGATCGAGAACGGCATGCTGCAGGAACT
GCACATCGAGCGCGGCTGGCGCCGGGGCGTGGTGGGCAATATCTACAAGGGCAAGGTGCAGCGGGTGATGCCGGGCATGC
AGGCTGCCTTCGTCGAAGTGGGGCTGGAGCGTGCCGCGTTCCTGCACGCCAACGACGTGGTCCGTCTGGCACCGGCACCA
GCCAGCGTGGTCGATACCGAAGAAACCCCGATCCCGCCGCCGCCGCCGGCCTCGGTGCCGATCGTGGAGCTGCTGCGCGA
CGGCCAGGAGATCGTGGTGCAGGTGGTCAAGGATCCGATCGGCACCAAGGGTGCGCGGTTGACCACGCAGATCAGCATCC
CTTCGCGCTATCTGGTGCTGCTGCCGCAGTCCAAGGTGGTTGGGGTGTCGGCGCGCATCGAAGACGAGGCCGAGCGGCTG
CGCCTGAAGACCATCGTCAGCGAGGTCTCGGCCCAGCATGGCGGCTTCGGCTACATCATCCGCACCAATGCCGAAGGCCA
GCCGGCCGAGGCGCTGGCCGAAGACATCGCCTATCTGTCGCGGGTCTGGAACGTGGTCGAGCGCCGCGGCCGCGAAGCGC
CGCCGTGCAGCATCATCTACGAAGACCTGAGCCTGCCGCTGCGCGCGGTGCGCGACCTGATCCGCCGCGACGTGGAAAAG
GTCAAGGTCGACTCCAACGAGACCTTCGTGCAACTGCAGGCGTTCGTGGCCAAGTACATGCCGGTGCTGGCCGAGCGGCT
GGAGCTGTACACCGGCGACCGCCCGATCTTCGACCTGTACGGGGTCGAAGACGAGATCGGACGCGCGCTGAACAAGCAGG
TGCCGCTCAAATCCGGCGGCTATCTGGTGATCGACCAGACCGAGGCGATGACCACCATCGACGTCAATACCGGCTCGTTC
GTCGGTCAGCGCAACCTCGAAGAAACCGTCTTCCGCACCAACCTGGAAGCCGCGCAGGCGGTGGCGCGGCAACTGCGCCT
GCGCAACCTGGGCGGCATCATCATCATCGACTTCATCGACATGGACGATGCGGAGCACCGCCGGCAGGTGCTGCGCACCC
TGGAAAAAGCGCTGGCGCGCGATCATGCCAAGACCACCGTGTATGAGTTCTCGCCGTTGGGCCTGGTGGAGATGACCCGC
AAGCGCACCGTCGAAAGCCTGGAGCGCCAGCTCTCGGAAACCTGCGGCCAGTGCGGCGGGCGCGGCACCATCAAGACCGC
CGAAACGGTGACCTACGAAATTTTCCGCGAGATCACCCGCGCCGTGCGCCAGTTCGATGCCGCGCGCCTGTTGGTGATCG
CCTCGTCGAAAGTGGTCGCCCGCATCACCGAGGAAGAGTCCGCCGCCGTGGCCGAACTGGAAGAGTTCCTCGGCAAGAGC
ATCCGCTTCCAGTCCGACGACCAGTACCTGCAGGAGCAGTTCGATGTGGTGCTGCTGTGA

Upstream 100 bases:

>100_bases
CCGAACGCTTCATCCGCCATCTGTCCGGAAGCTATTCCGGCGTGATGGGATTGCCGCTGTACCACACCTCGCAGTTGCTC
ACAGCCTTCGGAGCGCATTG

Downstream 100 bases:

>100_bases
GTCCGGGAATGGGGAATCGGGATTGGGGATTTGTAAAAGCCGGCCCCGTCATGATGTGCGGCCAGCAGGAGCGTTGACGT
TACCGTGCTTGGACACGCTG

Product: ribonuclease G

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MSEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEVGLERAAFLHANDVVRLAPAP
ASVVDTEETPIPPPPPASVPIVELLRDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERL
RLKTIVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK
VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSF
VGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTR
KRTVESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKS
IRFQSDDQYLQEQFDVVLL

Sequences:

>Translated_499_residues
MSEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEVGLERAAFLHANDVVRLAPAP
ASVVDTEETPIPPPPPASVPIVELLRDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERL
RLKTIVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK
VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSF
VGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTR
KRTVESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKS
IRFQSDDQYLQEQFDVVLL
>Mature_498_residues
SEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEVGLERAAFLHANDVVRLAPAPA
SVVDTEETPIPPPPPASVPIVELLRDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERLR
LKTIVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEKV
KVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFV
GQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRK
RTVESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKSI
RFQSDDQYLQEQFDVVLL

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=499, Percent_Identity=56.1122244488978, Blast_Score=526, Evalue=1e-150,
Organism=Escherichia coli, GI1787325, Length=475, Percent_Identity=36, Blast_Score=284, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 55744; Mature: 55612

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEV
CCCCEEEEECCCCCEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
GLERAAFLHANDVVRLAPAPASVVDTEETPIPPPPPASVPIVELLRDGQEIVVQVVKDPI
HHHHHHEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC
GTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERLRLKTIVSEVSAQHGGFGYII
CCCCCEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEE
RTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK
EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHCCHHHHHHHHHHHHHHH
VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGG
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCCC
YLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFID
EEEEECCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEC
MDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTVESLERQLSETCGQCGG
CCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
RGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKS
CCCCCHHHHHHHHHHHHHHHHHHHHCHHEEEEEECCHHEEEECCHHHHHHHHHHHHHCCC
IRFQSDDQYLQEQFDVVLL
CCCCCCHHHHHHHCCEECC
>Mature Secondary Structure 
SEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEV
CCCEEEEECCCCCEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
GLERAAFLHANDVVRLAPAPASVVDTEETPIPPPPPASVPIVELLRDGQEIVVQVVKDPI
HHHHHHEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC
GTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERLRLKTIVSEVSAQHGGFGYII
CCCCCEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEE
RTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK
EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHCCHHHHHHHHHHHHHHH
VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGG
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCCC
YLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFID
EEEEECCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEC
MDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTVESLERQLSETCGQCGG
CCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
RGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKS
CCCCCHHHHHHHHHHHHHHHHHHHHCHHEEEEEECCHHEEEECCHHHHHHHHHHHHHCCC
IRFQSDDQYLQEQFDVVLL
CCCCCCHHHHHHHCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]