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The map label for this gene is ydiU [C]

Identifier: 78048145

GI number: 78048145

Start: 2917657

End: 2919330

Strand: Reverse

Name: ydiU [C]

Synonym: XCV2589

Alternate gene names: 78048145

Gene position: 2919330-2917657 (Counterclockwise)

Preceding gene: 78048147

Following gene: 78048144

Centisome position: 56.37

GC content: 67.26

Gene sequence:

>1674_bases
ATGTGCAGGACGAGCCCGCTCGGCACACGCCAAGCGAGTGAAGATACGGTACGCACGCAGCGCCGGATGCGGCTTCGCCC
ATGTCAGGTTCACCGCCGGTGGCCTAGGCTTGCCGGCATGACACATTTGCACTTCGATAATCGTCTGCGTCAACAGCTGC
CTGGCGACCCGGAAGAGGGGGCGCGCCGGCGCGAGGTGGGCGCGGCCTGGTCGTCAGTCTTGCCGACGCCGGTCGCCGCT
CCGTACCTGATCGCGCATTCGGCGGAGATGGCGCAGGTGCTGGGCCTGGAGGCGGCCGAGATCGCCAGTGCGCAGTTCGC
CCAGGTGTTCGGCGGCAACGCGCTGTACCCGGGAATGCAGCCTTGGGCGGTCAACTACGGTGGGCATCAATTCGGGCATT
GGGCCGGACAGCTTGGCGACGGGCGGGCGATTTCGCTGGGCGAGGCGATCGGAACCGACGGTGGGCGCTACGAATTGCAG
CTCAAGGGTGCCGGCCCGACGCCGTATTCCCGCGGTGCCGATGGGCGCGCCGTATTGCGCTCGTCGATCCGCGAATTCCT
GTGCAGCGAGGCCATGCATCATCTGGGCGTGCCGACCACGCGTGCGTTGAGCCTGGTCGGCACTGGTGAGGCGGTGGTGC
GCGACATGTTCTACGACGGCCACCCGCAGCGCGAGCCGGGCGCGATCGTGTGCCGGGTGGCGCCTTCGTTCATCCGCTTC
GGCAACTTCGAATTGCCCAGCGCACGCGGCGATATCGCATTGCTGAAGCAGTGGGTGGATTTCACCATCGCCCGCGATTT
CCCGGCGTTGGCCGGTGCCGGCGAGGCGCTCTACGCCGACTGGTTTGCGCAGGTCTGCGAGCGTACCGCGGTGATGGTGG
CGCACTGGATGCGGGTCGGGTTCGTGCATGGGGTGATGAATACCGACAACATGTCGATCCTCGGTCTGACCATCGACTAC
GGCCCGTATGGCTGGGTCGACGACTATGACCCGGACTGGACGCCCAACACCACCGACGCGCAGGGGCGGCGCTATCGCTT
CGGCACCCAGCCGCAAGTGGCCTACTGGAACCTGGGCCGGCTTGCCCAGGCGCTGGCGCCGCTGTTTGCCGACCAGGCCC
TGCTGCAATATGGGCTGGATCGTTTTCGCGATACCTACCTGGCGTGCGACCGGCGCGACACCGCCGCCAAGCTGGGCTTG
GCAGAGTGTCGCGACGAGGATCTGCAGCTGATCGACGCGCTGCGCGCCCTGATGCGCGAATCCGAGATGGACATGACGCT
GACCTTCCGTGGGCTCATCGACCTGTCGCCCGAACATCCGGACCCCGCGCAGCTGCGCGACGCCTTTTACGACGAAGACA
AACGCCTGGTGGATGCGCCGCAGCTGCAGCAATGGCTGCAGCGCTATGCCGCGCGCCTGCAGCAGGATCCGCTGTCGCCG
GAAGAGCGGCGCGCGCGCATGCGCCTGGCCAACCCGCGCTATGTGTTGCGCAATTATCTGGCGCAGCAGGCGATCGACCG
TGCCGAGCAGGGTGACCCGTCCGGGGTGCAGGAGTTGCTGGAGGTCATGCGCCGCCCTTACGACGATCAGCACGGGCGCG
ACGCGTTTGCGGCGCGGCGGCCGGACTGGGCACGCGATCGCGCCGGGTGTTCGATGCTGTCGTGCAGTTCCTGA

Upstream 100 bases:

>100_bases
AGTGCAGACCAGAGAGTGGCGTCCCGGCAACGTTCGCCTCTGTCTGGTTCGCATCTGATCGGCAGCCGGCGGCCATTAGC
CGCTATCGCACGTCGCAAGC

Downstream 100 bases:

>100_bases
CGCGCTCAGATGCAGGTATGCCGTAAATCCGGCGTGGATGGCGTGCGCAGCCTAGAATAGGCGCAACCCCACCGGCCACC
ACGCCACCGCCCTCATGACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MCRTSPLGTRQASEDTVRTQRRMRLRPCQVHRRWPRLAGMTHLHFDNRLRQQLPGDPEEGARRREVGAAWSSVLPTPVAA
PYLIAHSAEMAQVLGLEAAEIASAQFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGTDGGRYELQ
LKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVGTGEAVVRDMFYDGHPQREPGAIVCRVAPSFIRF
GNFELPSARGDIALLKQWVDFTIARDFPALAGAGEALYADWFAQVCERTAVMVAHWMRVGFVHGVMNTDNMSILGLTIDY
GPYGWVDDYDPDWTPNTTDAQGRRYRFGTQPQVAYWNLGRLAQALAPLFADQALLQYGLDRFRDTYLACDRRDTAAKLGL
AECRDEDLQLIDALRALMRESEMDMTLTFRGLIDLSPEHPDPAQLRDAFYDEDKRLVDAPQLQQWLQRYAARLQQDPLSP
EERRARMRLANPRYVLRNYLAQQAIDRAEQGDPSGVQELLEVMRRPYDDQHGRDAFAARRPDWARDRAGCSMLSCSS

Sequences:

>Translated_557_residues
MCRTSPLGTRQASEDTVRTQRRMRLRPCQVHRRWPRLAGMTHLHFDNRLRQQLPGDPEEGARRREVGAAWSSVLPTPVAA
PYLIAHSAEMAQVLGLEAAEIASAQFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGTDGGRYELQ
LKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVGTGEAVVRDMFYDGHPQREPGAIVCRVAPSFIRF
GNFELPSARGDIALLKQWVDFTIARDFPALAGAGEALYADWFAQVCERTAVMVAHWMRVGFVHGVMNTDNMSILGLTIDY
GPYGWVDDYDPDWTPNTTDAQGRRYRFGTQPQVAYWNLGRLAQALAPLFADQALLQYGLDRFRDTYLACDRRDTAAKLGL
AECRDEDLQLIDALRALMRESEMDMTLTFRGLIDLSPEHPDPAQLRDAFYDEDKRLVDAPQLQQWLQRYAARLQQDPLSP
EERRARMRLANPRYVLRNYLAQQAIDRAEQGDPSGVQELLEVMRRPYDDQHGRDAFAARRPDWARDRAGCSMLSCSS
>Mature_557_residues
MCRTSPLGTRQASEDTVRTQRRMRLRPCQVHRRWPRLAGMTHLHFDNRLRQQLPGDPEEGARRREVGAAWSSVLPTPVAA
PYLIAHSAEMAQVLGLEAAEIASAQFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGTDGGRYELQ
LKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVGTGEAVVRDMFYDGHPQREPGAIVCRVAPSFIRF
GNFELPSARGDIALLKQWVDFTIARDFPALAGAGEALYADWFAQVCERTAVMVAHWMRVGFVHGVMNTDNMSILGLTIDY
GPYGWVDDYDPDWTPNTTDAQGRRYRFGTQPQVAYWNLGRLAQALAPLFADQALLQYGLDRFRDTYLACDRRDTAAKLGL
AECRDEDLQLIDALRALMRESEMDMTLTFRGLIDLSPEHPDPAQLRDAFYDEDKRLVDAPQLQQWLQRYAARLQQDPLSP
EERRARMRLANPRYVLRNYLAQQAIDRAEQGDPSGVQELLEVMRRPYDDQHGRDAFAARRPDWARDRAGCSMLSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=603, Percent_Identity=42.12271973466, Blast_Score=348, Evalue=6e-96,
Organism=Escherichia coli, GI1787999, Length=495, Percent_Identity=45.8585858585859, Blast_Score=392, Evalue=1e-110,
Organism=Saccharomyces cerevisiae, GI6325034, Length=355, Percent_Identity=38.0281690140845, Blast_Score=218, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 62466; Mature: 62466

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRTSPLGTRQASEDTVRTQRRMRLRPCQVHRRWPRLAGMTHLHFDNRLRQQLPGDPEEG
CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCHHH
ARRREVGAAWSSVLPTPVAAPYLIAHSAEMAQVLGLEAAEIASAQFAQVFGGNALYPGMQ
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
PWAVNYGGHQFGHWAGQLGDGRAISLGEAIGTDGGRYELQLKGAGPTPYSRGADGRAVLR
CCEECCCCCHHHHHHCCCCCCCEEECCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHH
SSIREFLCSEAMHHLGVPTTRALSLVGTGEAVVRDMFYDGHPQREPGAIVCRVAPSFIRF
HHHHHHHHHHHHHHCCCCHHHHEEEECCCHHHHHHHHHCCCCCCCCCEEEEEECHHHHHC
GNFELPSARGDIALLKQWVDFTIARDFPALAGAGEALYADWFAQVCERTAVMVAHWMRVG
CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FVHGVMNTDNMSILGLTIDYGPYGWVDDYDPDWTPNTTDAQGRRYRFGTQPQVAYWNLGR
HHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEECHHH
LAQALAPLFADQALLQYGLDRFRDTYLACDRRDTAAKLGLAECRDEDLQLIDALRALMRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHCCHHHHHHHHHHHHHHH
SEMDMTLTFRGLIDLSPEHPDPAQLRDAFYDEDKRLVDAPQLQQWLQRYAARLQQDPLSP
CCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHCCCCCH
EERRARMRLANPRYVLRNYLAQQAIDRAEQGDPSGVQELLEVMRRPYDDQHGRDAFAARR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCC
PDWARDRAGCSMLSCSS
CCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MCRTSPLGTRQASEDTVRTQRRMRLRPCQVHRRWPRLAGMTHLHFDNRLRQQLPGDPEEG
CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCHHH
ARRREVGAAWSSVLPTPVAAPYLIAHSAEMAQVLGLEAAEIASAQFAQVFGGNALYPGMQ
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
PWAVNYGGHQFGHWAGQLGDGRAISLGEAIGTDGGRYELQLKGAGPTPYSRGADGRAVLR
CCEECCCCCHHHHHHCCCCCCCEEECCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHH
SSIREFLCSEAMHHLGVPTTRALSLVGTGEAVVRDMFYDGHPQREPGAIVCRVAPSFIRF
HHHHHHHHHHHHHHCCCCHHHHEEEECCCHHHHHHHHHCCCCCCCCCEEEEEECHHHHHC
GNFELPSARGDIALLKQWVDFTIARDFPALAGAGEALYADWFAQVCERTAVMVAHWMRVG
CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FVHGVMNTDNMSILGLTIDYGPYGWVDDYDPDWTPNTTDAQGRRYRFGTQPQVAYWNLGR
HHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEECHHH
LAQALAPLFADQALLQYGLDRFRDTYLACDRRDTAAKLGLAECRDEDLQLIDALRALMRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHCCHHHHHHHHHHHHHHH
SEMDMTLTFRGLIDLSPEHPDPAQLRDAFYDEDKRLVDAPQLQQWLQRYAARLQQDPLSP
CCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHCCCCCH
EERRARMRLANPRYVLRNYLAQQAIDRAEQGDPSGVQELLEVMRRPYDDQHGRDAFAARR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCC
PDWARDRAGCSMLSCSS
CCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]