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The map label for this gene is sodM [H]

Identifier: 78048139

GI number: 78048139

Start: 2911509

End: 2912120

Strand: Reverse

Name: sodM [H]

Synonym: XCV2583

Alternate gene names: 78048139

Gene position: 2912120-2911509 (Counterclockwise)

Preceding gene: 78048142

Following gene: 78048137

Centisome position: 56.24

GC content: 60.62

Gene sequence:

>612_bases
ATGGCTTACACCCTTCCGCAGTTGCCCTACGCCTACGACGCGCTGGAACCGAACATCGATGCGCAAACGATGGAAATCCA
TCACACCAAGCATCACCAGACCTACATCAACAACGTCAACGCGGCGCTGGAAGGGACCGAGTACGCCGATCTGCCGATCG
AAGAACTGGTCTCCAAGCTGAAGAGCCTGCCGGAAAACCTGCAGGGCCCGGTGCGCAACAATGGCGGCGGCCACGCCAAC
CATTCCCTGTTCTGGACCGTGCTGTCGCCCAACGGTGGCGGAGAGCCCAAGGGCGAGGTCGCCAAGGCGATCGACAAGGA
TGTTGGTGGTTTCGAGAAATTCAAGGAAGCCTTCACCAAGGCCGCCGTTAGCCGCTTTGGCTCGGGTTGGGCGTGGTTGA
GCGTGACCCCCGACAAAAAGCTGGTGGTGGAAAGCACCGCCAACCAGGACAGCCCGCTGTTCGAGGGCAACACCCCGATC
CTGGGTCTGGACGTGTGGGAACACGCGTACTACCTGAAGTACCAGAACCGTCGCCCGGAATACATCGGCGCGTTCTACAA
CGCCGTCAATTGGGAAGAAGTCGAGCGCCGCTACCACGCCGCGATCGCCTGA

Upstream 100 bases:

>100_bases
GAAGTTTCCCTGCCAGCACCCTTGGTAAGCGCTGCCGCCGTCCTTACCATTCACCCCGCAACGCCCGGTCTTCGCCGGGC
GGCAAGTCCAGGAGATACGC

Downstream 100 bases:

>100_bases
GGTCCTGCACCGGCGCCAGGCACTGCCTAGCGCTGTGACAGCGGCACCCAACGTACAAGGCCGGGAGCGATCCCGGCCTT
GTACGTTTACTGCGCTGTGG

Product: superoxidase dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAYTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPIEELVSKLKSLPENLQGPVRNNGGGHAN
HSLFWTVLSPNGGGEPKGEVAKAIDKDVGGFEKFKEAFTKAAVSRFGSGWAWLSVTPDKKLVVESTANQDSPLFEGNTPI
LGLDVWEHAYYLKYQNRRPEYIGAFYNAVNWEEVERRYHAAIA

Sequences:

>Translated_203_residues
MAYTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPIEELVSKLKSLPENLQGPVRNNGGGHAN
HSLFWTVLSPNGGGEPKGEVAKAIDKDVGGFEKFKEAFTKAAVSRFGSGWAWLSVTPDKKLVVESTANQDSPLFEGNTPI
LGLDVWEHAYYLKYQNRRPEYIGAFYNAVNWEEVERRYHAAIA
>Mature_202_residues
AYTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPIEELVSKLKSLPENLQGPVRNNGGGHANH
SLFWTVLSPNGGGEPKGEVAKAIDKDVGGFEKFKEAFTKAAVSRFGSGWAWLSVTPDKKLVVESTANQDSPLFEGNTPIL
GLDVWEHAYYLKYQNRRPEYIGAFYNAVNWEEVERRYHAAIA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=50.4950495049505, Blast_Score=203, Evalue=1e-52,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=50.4950495049505, Blast_Score=203, Evalue=1e-52,
Organism=Homo sapiens, GI67782309, Length=202, Percent_Identity=39.1089108910891, Blast_Score=142, Evalue=2e-34,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=60.8695652173913, Blast_Score=254, Evalue=4e-69,
Organism=Escherichia coli, GI1787946, Length=200, Percent_Identity=46.5, Blast_Score=193, Evalue=8e-51,
Organism=Caenorhabditis elegans, GI17569479, Length=199, Percent_Identity=43.7185929648241, Blast_Score=165, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17506561, Length=204, Percent_Identity=43.6274509803922, Blast_Score=165, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=41.0628019323672, Blast_Score=148, Evalue=7e-37,
Organism=Drosophila melanogaster, GI17136812, Length=202, Percent_Identity=45.5445544554455, Blast_Score=167, Evalue=3e-42,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22703; Mature: 22572

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPIEELVSKL
CCCCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHH
KSLPENLQGPVRNNGGGHANHSLFWTVLSPNGGGEPKGEVAKAIDKDVGGFEKFKEAFTK
HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
AAVSRFGSGWAWLSVTPDKKLVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPE
HHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHEEEEEECCCCCH
YIGAFYNAVNWEEVERRYHAAIA
HHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AYTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPIEELVSKL
CCCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHH
KSLPENLQGPVRNNGGGHANHSLFWTVLSPNGGGEPKGEVAKAIDKDVGGFEKFKEAFTK
HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
AAVSRFGSGWAWLSVTPDKKLVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPE
HHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHEEEEEECCCCCH
YIGAFYNAVNWEEVERRYHAAIA
HHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8810073 [H]