Click here to switch to the map view.

The map label for this gene is ycjN [C]

Identifier: 78048064

GI number: 78048064

Start: 2830152

End: 2831522

Strand: Reverse

Name: ycjN [C]

Synonym: XCV2508

Alternate gene names: 78048064

Gene position: 2831522-2830152 (Counterclockwise)

Preceding gene: 78048065

Following gene: 78048063

Centisome position: 54.68

GC content: 64.55

Gene sequence:

>1371_bases
GTGCGCCTTTTGAAACTGTTGATGTTGGCCGTCGCCCTGTGTGCAGGTGCGACGGGATGCGAACGCTCCGATCCGGGCAA
GACCACGGTGCGCTTCTGGGCGATGGGCAAGGAGGCCGAAGTGGTCGCCGAGCTGGTGGCCGATTTCGAAAAGCAGAACC
CCACCATCCACGTGGATGTGCAGAACATCCCGATGACGGCGGCACACGAAAAACTGCTGACCGCCTTTGCCGCCGATGGC
CTGCCGGATGTGTGCCAGCTCGGCAACACCTGGCTGCCGGAGTTCGCGCTGCTGGACACGTTGGAGCCGATGCAGCCGTA
CGTGGCGCGCTCCAGCGTTGTCGACCCGGCCGACTATTTCCCTGGCGTGTGGGACACCAATCTGGTCGATGGCACGCTGT
ACGGCGTGCCGTGGTATGTGGACACGCGGCTGCTGTTCTACCGCAAGGACCTGCTGCGCGAGGCCGGCTATAGCGAAATG
CCCAAGACCTGGGCCGAGATGGAACAGGTGATGGCCGCGATCAAGCGCAAGGTCGGCCCCGACCGCTATGCCATCCTGAT
GCCGCTCAACGAATTCGAGCAGCAATTGTCGTTCGCGCTGCAGCAGGACGACCGCCTGCTGCGCGACCACGACAACTACG
GCAACTTCCGTGGCGCCGGTTTCCGCAAGGCGCTGGGTTTCTACGACAACATGTATCAGCAGGGCTGGGCGCCCAAGGTC
TCAGAGACCCAGGTCTCCAATGTCTGGTACGAATTCTTCAACGGCTATTACGCCTTCTATCTGTCCGGGCCGTGGAACGT
GCGCGAGTTCAAGCTGCGCCAGCCGCCGGGCATGGAAGGCAAGTGGGGCACCGCGCCGTTGCCGGGGCCCAACGGCTTGG
GTGCCGGCATCGCCGGCGGTTCCAGCCTGGTGATCTTCAAGTCCTCGCAACACAAGGACGCCAGTTGGAAGCTGATCGAA
TATCTGTCGCAGCCGCAGGTGCAGGCGCGTTTCCACGCCATCATCGGCGACCTGCCGCCGCGTCGAAGTACCTGGAAGCT
GCCTTCGCTGGCCAACGACGAACTGGCGCATGCCTTCGGCGACCAGCTGGAGCGGGTCAAGGCCACGCCCAAGGTGCTGG
AGTGGGAGCGCATCGTGCAGGAAATGCGTCTGGTCACCGAGCGCGTGGTGCGCGGCGGGCAATCGCACGAAGCCGCCGTG
CAGGAACTGGATCAACGCGTGGACGAAATCTTGGCCAAGCGCCGCTGGATCTTCGAGCAGGAGGGCGGGCATGTCGGCCC
GGCCGGTGACACCGCTCCGCCGGCAGTGAAGCCAGCGGCAGCAGGCACCACCGCGCCAGCTGCCGCAGCGGATCAGGGAG
CCGCACGATGA

Upstream 100 bases:

>100_bases
GCAGAAGGCCGCCGCGCGCGCGCTGGGCATGGCCGAATCGCGTGCCGCCGCCGCCCAGGCCCAGCAAGACCCCTCGCAAC
GCCAGAAACCCGAGTAATCC

Downstream 100 bases:

>100_bases
TGAAGCGTAATTCCGTCGCCGGCTGGGTCTTTGCCGCGCCGTCGATCATGGTGCTGGGCATGTTCTTCGGCGTGCCGGTG
TTCGCCGCGCTGGTGCTCAG

Product: ABC transporter sugar-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MRLLKLLMLAVALCAGATGCERSDPGKTTVRFWAMGKEAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADG
LPDVCQLGNTWLPEFALLDTLEPMQPYVARSSVVDPADYFPGVWDTNLVDGTLYGVPWYVDTRLLFYRKDLLREAGYSEM
PKTWAEMEQVMAAIKRKVGPDRYAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQQGWAPKV
SETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPPGMEGKWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKDASWKLIE
YLSQPQVQARFHAIIGDLPPRRSTWKLPSLANDELAHAFGDQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHEAAV
QELDQRVDEILAKRRWIFEQEGGHVGPAGDTAPPAVKPAAAGTTAPAAAADQGAAR

Sequences:

>Translated_456_residues
MRLLKLLMLAVALCAGATGCERSDPGKTTVRFWAMGKEAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADG
LPDVCQLGNTWLPEFALLDTLEPMQPYVARSSVVDPADYFPGVWDTNLVDGTLYGVPWYVDTRLLFYRKDLLREAGYSEM
PKTWAEMEQVMAAIKRKVGPDRYAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQQGWAPKV
SETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPPGMEGKWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKDASWKLIE
YLSQPQVQARFHAIIGDLPPRRSTWKLPSLANDELAHAFGDQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHEAAV
QELDQRVDEILAKRRWIFEQEGGHVGPAGDTAPPAVKPAAAGTTAPAAAADQGAAR
>Mature_456_residues
MRLLKLLMLAVALCAGATGCERSDPGKTTVRFWAMGKEAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADG
LPDVCQLGNTWLPEFALLDTLEPMQPYVARSSVVDPADYFPGVWDTNLVDGTLYGVPWYVDTRLLFYRKDLLREAGYSEM
PKTWAEMEQVMAAIKRKVGPDRYAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQQGWAPKV
SETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPPGMEGKWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKDASWKLIE
YLSQPQVQARFHAIIGDLPPRRSTWKLPSLANDELAHAFGDQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHEAAV
QELDQRVDEILAKRRWIFEQEGGHVGPAGDTAPPAVKPAAAGTTAPAAAADQGAAR

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 50828; Mature: 50828

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLKLLMLAVALCAGATGCERSDPGKTTVRFWAMGKEAEVVAELVADFEKQNPTIHVDV
CHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEE
QNIPMTAAHEKLLTAFAADGLPDVCQLGNTWLPEFALLDTLEPMQPYVARSSVVDPADYF
CCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHC
PGVWDTNLVDGTLYGVPWYVDTRLLFYRKDLLREAGYSEMPKTWAEMEQVMAAIKRKVGP
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
DRYAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQQGWAPKV
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
SETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPPGMEGKWGTAPLPGPNGLGAGIAGG
CHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSLVIFKSSQHKDASWKLIEYLSQPQVQARFHAIIGDLPPRRSTWKLPSLANDELAHAFG
CEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
DQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHEAAVQELDQRVDEILAKRRWIFEQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
EGGHVGPAGDTAPPAVKPAAAGTTAPAAAADQGAAR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLLKLLMLAVALCAGATGCERSDPGKTTVRFWAMGKEAEVVAELVADFEKQNPTIHVDV
CHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEE
QNIPMTAAHEKLLTAFAADGLPDVCQLGNTWLPEFALLDTLEPMQPYVARSSVVDPADYF
CCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHC
PGVWDTNLVDGTLYGVPWYVDTRLLFYRKDLLREAGYSEMPKTWAEMEQVMAAIKRKVGP
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
DRYAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQQGWAPKV
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
SETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPPGMEGKWGTAPLPGPNGLGAGIAGG
CHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSLVIFKSSQHKDASWKLIEYLSQPQVQARFHAIIGDLPPRRSTWKLPSLANDELAHAFG
CEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
DQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHEAAVQELDQRVDEILAKRRWIFEQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
EGGHVGPAGDTAPPAVKPAAAGTTAPAAAADQGAAR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA