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The map label for this gene is 78047999

Identifier: 78047999

GI number: 78047999

Start: 2777586

End: 2778017

Strand: Reverse

Name: 78047999

Synonym: XCV2443

Alternate gene names: NA

Gene position: 2778017-2777586 (Counterclockwise)

Preceding gene: 78048000

Following gene: 78047998

Centisome position: 53.65

GC content: 67.13

Gene sequence:

>432_bases
ATGATCCGCGTGGCGGCTTTTCTCTGCGGCGCCTTGTTCGGGTTGGGCCTGGTGATTTCGGACATGGCCAATCCTGCACG
CGTCCTTGCCTTCCTCGATGTCACCGGTGCCTGGGATGATTCGCTGGCCCTGGTGATGGCAGGCGCGCTGATCCCTTCGG
CCATCGCCTACCAATGGGCGCGCGCACGCCGCACTCCCTTGCTCGCCCCGACACTGCAGCTGCCGCAGCAGCGGCGGATC
GACCGCAAGCTGGTGATCGGTGCGGCGCTGTTTGGCATTGGCTGGGGTCTGGCCGGGGTCTGCCCTGGCCCCGCCATCGC
GCTGTTGGCGACCGGCCAGGCGTTCGCCTTGGTGTTCGCTGCCTCGCTGGTGGCAGGCGTCTTCCTCCACAGCTTTCTCC
ATCGCGCCGGCGCGGGAAAACACGTCGCATGA

Upstream 100 bases:

>100_bases
TGGCAAGACTGTCGCCGCGCTCGATCGTCGCCACCACCGTGTTCATGCTGCTGGGCATGGCAACAGTGACGGCCGTGCGG
GCTGTCGCTGGAGCGGGCGC

Downstream 100 bases:

>100_bases
AGCTGCGATCGCTTTCGCCTGCCCTGCTGGTGGCCGGCCAATTGTTGCCTGCCGATCTTCCTGCCCTGGCCAGCCTGGGT
GTCGCCAGCGTTGTCTGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MIRVAAFLCGALFGLGLVISDMANPARVLAFLDVTGAWDDSLALVMAGALIPSAIAYQWARARRTPLLAPTLQLPQQRRI
DRKLVIGAALFGIGWGLAGVCPGPAIALLATGQAFALVFAASLVAGVFLHSFLHRAGAGKHVA

Sequences:

>Translated_143_residues
MIRVAAFLCGALFGLGLVISDMANPARVLAFLDVTGAWDDSLALVMAGALIPSAIAYQWARARRTPLLAPTLQLPQQRRI
DRKLVIGAALFGIGWGLAGVCPGPAIALLATGQAFALVFAASLVAGVFLHSFLHRAGAGKHVA
>Mature_143_residues
MIRVAAFLCGALFGLGLVISDMANPARVLAFLDVTGAWDDSLALVMAGALIPSAIAYQWARARRTPLLAPTLQLPQQRRI
DRKLVIGAALFGIGWGLAGVCPGPAIALLATGQAFALVFAASLVAGVFLHSFLHRAGAGKHVA

Specific function: Unknown

COG id: COG2391

COG function: function code R; Predicted transporter component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0394 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007272 [H]

Pfam domain/function: PF04143 DUF395 [H]

EC number: NA

Molecular weight: Translated: 14843; Mature: 14843

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVAAFLCGALFGLGLVISDMANPARVLAFLDVTGAWDDSLALVMAGALIPSAIAYQWA
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
RARRTPLLAPTLQLPQQRRIDRKLVIGAALFGIGWGLAGVCPGPAIALLATGQAFALVFA
HHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHH
ASLVAGVFLHSFLHRAGAGKHVA
HHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIRVAAFLCGALFGLGLVISDMANPARVLAFLDVTGAWDDSLALVMAGALIPSAIAYQWA
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
RARRTPLLAPTLQLPQQRRIDRKLVIGAALFGIGWGLAGVCPGPAIALLATGQAFALVFA
HHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHH
ASLVAGVFLHSFLHRAGAGKHVA
HHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12533478 [H]